KEGG   Schizosaccharomyces osmophilus (fission yeast): SOMG_00323
Entry
SOMG_00323        CDS       T09274                                 
Symbol
rrp41
Name
(RefSeq) exosome subunit Rrp41
  KO
K11600  exosome complex component RRP41
Organism
som  Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:som00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SOMG_00323 (rrp41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:som03019]
    SOMG_00323 (rrp41)
Messenger RNA biogenesis [BR:som03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     SOMG_00323 (rrp41)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     SOMG_00323 (rrp41)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C DUF2000
Other DBs
NCBI-GeneID: 80873806
NCBI-ProteinID: XP_056035474
UniProt: A0AAE9W7B3
LinkDB
Position
1:join(705001..705003,705063..705099,705250..705935)
AA seq 241 aa
MSLEILSLEGLRNDGRRWNEMRNFYCRTGVEPSENGSSFIQYGNTRVLCIIDGPSEPTIK
SKSRADRAFVNVDISIAPFSTIDRKRRFKSDRRIQLQCLALQRTFEQVVQVELYPKSQIS
ICLHVLHDDGAVVATCMNAATLALMDAGIPMTDYVCCCTSGIVDSDILLDLNSLEESDLS
WMTVAVMGTKNKVTYMQLETKMHLDYLDSVMNVAIAGAEQIYYMMQNAIRQSAKPYLAKL
V
NT seq 726 nt   +upstreamnt  +downstreamnt
atgtctcttgaaattttatcgctagaaggtcttcgaaatgacggtcgaagatggaacgaa
atgagaaatttctattgccggactggcgtggagccttctgagaatggctcttcttttatt
caatatggcaacacacgagtgctgtgtattatagacggaccttcggagccgacgatcaaa
tcgaaatcgagagcggatcgagcctttgtaaatgtagatattagcattgcaccttttagc
acaattgatcggaaacgacggttcaaatcggatcgacggattcaattgcaatgtctggca
ttacagaggacatttgaacaagtggttcaagtggagctatatccgaaaagtcaaatatcc
atttgcttgcatgtgctgcatgatgatggtgctgtggttgctacatgcatgaacgctgct
acgttggcacttatggatgctggaattcccatgacggattatgtttgctgttgtacatcc
gggattgttgactctgacattcttttggatttgaattctttggaagaatccgatttgtct
tggatgacggttgcagttatgggaaccaaaaacaaagttacttatatgcagctcgagacg
aaaatgcatcttgactacttggactctgtcatgaatgtggccattgcaggagcggaacaa
atttattacatgatgcagaatgccattcgacaaagtgccaaaccgtatttggcaaagctt
gtataa

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