Schizosaccharomyces osmophilus (fission yeast): SOMG_00363
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Entry
SOMG_00363 CDS
T09274
Symbol
exo2
Name
(RefSeq) exonuclease II Exo2
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03008
Ribosome biogenesis in eukaryotes
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SOMG_00363 (exo2)
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_00363 (exo2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_00363 (exo2)
03009 Ribosome biogenesis [BR:
som03009
]
SOMG_00363 (exo2)
03016 Transfer RNA biogenesis [BR:
som03016
]
SOMG_00363 (exo2)
03036 Chromosome and associated proteins [BR:
som03036
]
SOMG_00363 (exo2)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
SOMG_00363 (exo2)
mRNA degradation factors
5'-3' decay
5' exonucleases
SOMG_00363 (exo2)
Ribosome biogenesis [BR:
som03009
]
Eukaryotic type
Pre-60S particles
RNases
SOMG_00363 (exo2)
Transfer RNA biogenesis [BR:
som03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
SOMG_00363 (exo2)
Chromosome and associated proteins [BR:
som03036
]
Eukaryotic type
Gene silencing
piRNA pathway
SOMG_00363 (exo2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
80873846
NCBI-ProteinID:
XP_056036264
UniProt:
A0AAE9WAT5
LinkDB
All DBs
Position
1:complement(join(793320..797235,797290..797345))
Genome browser
AA seq
1323 aa
AA seq
DB search
MSERYPLCSQLIENDRIPEFDNMYLDMNGILHNCTHKNDDHSSPPLPEEEMYIAIFNYIE
HLFEKIKPKKLLYMAVDGCAPRAKMNQQRSRRFRTAKDAHDARLKAEKNGEEIPEARFDS
NCITPGTTFMERVSRQLYYFIHKKITNDSNWSNIQVILSGHDTPGEGEHKIMEYIRTQKA
QPDYNPNTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGPASKRRSTELANQKFYLLH
LSLLREYLEFEFQECRSSFSFKYDLERILDDFILLAFFVGNDFLPHLPGLHINEGALALM
FNIYKKVMPTAGGYINEHGVINMDRLELILLELENFEKEVFRSEVYESKRQPANEKQSFD
FQKYLKTFSDDIKALTVNQKQFYASIRKFLSSRDLYLDFPPNISTADQRFIRHLANELHL
SCAKLTRVDGIENVRVAFKDLAFEGDDEVEQEEIEKVLQKYDQLPLLHEDQLKQEASVED
DFIQWKDAYYRDKVHFSYFNEDALRDMTQRYVEGLQWVLFYYYRGCQSWGWYYNYHYSPK
ISDVLKGLRAKTDFEMGTPFRPFEQLMAVLPSKSSELVPPSFRELMFNSESPIKDFYPEN
FTLDQNGKTASWEAVVIIPFIDERRLLDALRSRENLLTDNERERNMFRPPTVFTLAENYT
SSFPSSLPYVFPDLITRCVERPYQLPSMDGKQYLVGLCPGVYLGAFGMVGFPSFHTLKIT
AELSLHGINVFGNESKNPSVIVDVHDQRQALTNEQLAAQYIGRRIFVDWPYLREALVESA
ADGNVVYQITDGELEQRELNEYEKKSFERKVSSKGREYNKRFGVLFGDMRLMLQVRPIKG
LQYTQEGALVKAFNDNVLDDYPIQLVVDKIAIDDPRFIEKEAPPLDVEYPSGTKAFHLGE
YNYGRPAQVIGCKNNRLAIWLSTAPGLDATWGRMLVEDSKSKQRYYPSYVVAKMLNLHPL
LLSKITASYLITVGNKRENIGLNLKFDARNQKVLGYSRKSGTGWEFSDKAVLLIREYMDT
FPQLFHILTTHATKENVNANDLFPKEEGGKLTAVKTWMKEKEINSLYRVALDEDALDTES
IQMVEEKAASVDSTYQVPRKVFGVPRYALLKPCQTKSLLHSQTFSLGDRVVYVQDSGKVP
IAAYGTVVSIASHQLDVVFDLPFMSGTTLDGKCSPYRGMQVEPSMILNVTEPQFVVTTRA
GSARKNKSVSNTTPSHPKSTPSSRLVTEHSSAYPPPPPPPSSAWAKNTESRSSNGQSLHS
VPSLPFDYSTNKSNKKPTQANYHRHSNAYSPNQRGRGGKRGGRANRPDSETHEVTKKLNN
VQI
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaagatatccgctatgcagtcaattaattgaaaatgatcggattccagaattc
gataatatgtacttggacatgaacggtatcttgcacaattgcacgcacaaaaatgatgat
cattcgtcgcctccacttcccgaagaagaaatgtatattgctatttttaattacattgaa
catctttttgaaaaaataaagccaaaaaagcttttgtatatggccgtcgatggttgtgct
cctagagcaaagatgaatcaacagagaagtcggcgttttcgaactgccaaggatgctcat
gatgctcgtttaaaggcagagaaaaacggcgaagagattccagaggctcgttttgatagt
aattgcattaccccaggaaccacatttatggaacgagtgtcgcgtcaactctattatttt
attcataaaaagattaccaacgattccaattggagtaatattcaggttatcctttctgga
catgatactcctggtgaaggtgaacataaaattatggagtatattcgtacccaaaaggct
caaccagattataatcccaatacacgccattgcttgtatggtttagatgcagacttaatt
atgcttggtctcttgtctcacgatcctcacttttgtttactaagagaagaggttactttt
ggcccagctagtaaacgtcgttcgacggagctggcaaatcagaaattttatttgttacat
ttaagtctccttagagaatatttagaatttgaatttcaggaatgtcgttcatccttttct
tttaagtacgatctcgagcgaattcttgatgactttattttattggcatttttcgttggt
aatgattttcttcctcatttacccggtctacatattaatgaaggtgctttggctttaatg
tttaacatttataagaaggtgatgccaactgctggcggttacatcaatgaacacggcgtt
attaatatggatcgcttggaacttatattgctggaacttgaaaattttgaaaaagaagta
tttcgttctgaggtttatgagtctaaaaggcaaccagcaaacgaaaaacaatcttttgat
tttcaaaaataccttaaaactttcagtgatgatattaaagctcttacagtgaatcagaaa
caattttatgcatctatccgcaaatttttgtcttctcgtgacctttatttagactttcca
cctaatatatccaccgccgaccaacgttttatccgtcatcttgcaaacgaattacatctc
tcctgtgctaagctaaccagagtggatggcatcgaaaatgtgagagttgctttcaaggat
ttggcattcgagggcgatgatgaagtcgaacaagaagaaattgaaaaagtcctgcagaaa
tatgatcagcttcctttactacatgaagatcaacttaaacaagaagctagcgttgaagat
gatttcattcaatggaaggatgcctattaccgtgacaaggtacacttcagctattttaac
gaggatgctttgcgggatatgactcaaagatacgtcgaaggcttacaatgggtcctcttc
tattactaccgtggttgtcaatcatggggttggtattataattatcattattctcccaaa
atatctgatgttttaaagggtttgagggcaaaaactgattttgagatgggtacaccattc
cgtccttttgagcaattgatggcagtattaccatctaaaagcagcgaattggttcctcct
tcttttagagaacttatgttcaactctgaatctcctatcaaagatttctaccccgagaat
tttactttagatcagaatggcaaaacggctagttgggaagctgtcgttattatcccattc
attgatgagcgtcggcttttggatgctttgcgatctcgagaaaatcttttaacggacaac
gaacgcgaacgcaacatgtttagacctccgactgtatttactttagctgaaaattacaca
tcgagcttcccttcttcattgccctatgtgtttcccgacttgattacaagatgtgtggag
cgaccgtaccaactgccatctatggatggtaaacagtacttggttggtttatgcccggga
gtatatttaggtgcatttggtatggtaggattcccatcgtttcacaccttgaagattaca
gctgaactttccttgcatggcataaacgtttttggaaatgagagcaaaaacccgagcgtg
attgttgacgttcacgaccaaaggcaagcgttgacaaatgaacagcttgccgctcagtac
attggtcgaagaatattcgtagactggccatatttacgtgaagctctcgttgaaagtgct
gcggatggaaatgtcgtttaccaaataaccgatggtgaactagaacaacgagaattaaac
gaatatgaaaagaagtcttttgaacggaaggtctcgtctaaaggaagagagtataacaag
cgttttggcgtgctttttggtgatatgcgccttatgttacaagttcgccctataaaaggc
ttacagtacacccaagaaggggctctggtgaaagcttttaatgacaatgttttagacgac
tatccaattcagttggtggttgataaaattgctattgacgatccacgttttattgaaaaa
gaagctcctcctcttgacgtcgaatatccttcaggtactaaggcatttcatttgggcgaa
tacaattatggcagacctgcccaggtgattggttgtaaaaacaacaggttggctatttgg
ttatcaaccgcccctggtttggatgctacttggggtcgtatgcttgtggaagattccaag
tctaagcagaggtattatccctcttacgtggttgctaaaatgctcaatttacatcctctg
cttttaagtaaaataacggctagttatctcattacagttggcaataaaagagaaaatatc
ggtttgaatttgaagttcgatgctcgaaaccagaaagtgttaggatattcaagaaaaagt
ggtaccggctgggagttttctgataaagctgtgttgttgattagggagtatatggatact
tttccacagttatttcacatcctaaccacccatgccactaaagaaaatgtgaatgctaat
gatttgtttcctaaggaagagggtggaaagttaacagctgtcaagacatggatgaaagaa
aaagaaataaactctctttaccgagtcgccttggatgaagatgcattggatacagaaagt
attcaaatggtagaagaaaaagccgcatctgttgattctacttatcaagttcctcgaaaa
gttttcggtgttccccgttatgctttattgaaaccttgtcaaactaaaagtttgctacac
agtcagacattctctttgggtgatcgtgtcgtatatgttcaagattctggtaaagttccc
atagctgcttacggtacggttgtcagtatcgcctctcatcagcttgatgttgtttttgat
ttaccattcatgagtggtacaaccctggacgggaaatgttctccatatagaggaatgcaa
gttgaaccctctatgattttgaacgtcacagaaccccagtttgtcgttactacccgtgct
ggatccgccagaaaaaacaaatcggtgagtaatactaccccatctcatcctaagtcaact
ccttcaagtcgtcttgtaacagaacacagctcagcttatcctcctcctcctcctcctcct
tctagtgcatgggccaagaacacagaatcaagatcatccaatggccagtcattgcatagt
gttccttctttgccttttgattactccacaaataagtcaaacaaaaagcccacacaagca
aattaccatcgtcattccaacgcatattcgccgaaccagagaggacgaggtggtaaacgt
ggaggcagagcgaatcgcccagattctgaaacgcacgaagttactaaaaaattgaacaac
gttcaaatttaa
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