Schizosaccharomyces osmophilus (fission yeast): SOMG_00552
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Entry
SOMG_00552 CDS
T09274
Symbol
cwf3
Name
(RefSeq) Prp19 complex subunit Cwf3
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SOMG_00552 (cwf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_00552 (cwf3)
03041 Spliceosome [BR:
som03041
]
SOMG_00552 (cwf3)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
SOMG_00552 (cwf3)
Spliceosome [BR:
som03041
]
Complex B
Other components
Prp19-related factors
SOMG_00552 (cwf3)
Complex C
SOMG_00552 (cwf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
NRDE-2
TPR_8
Mad3_BUB1_I
TPR_12
RPN7
TPR_2
AbiH
Motif
Other DBs
NCBI-GeneID:
80874035
NCBI-ProteinID:
XP_056036762
LinkDB
All DBs
Position
1:join(1189312..1190127,1190231..1191820)
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AA seq
801 aa
AA seq
DB search
MSETAQLKVHSDLLDIEDEPFELELLRSPYSLRSWLRYLSARENSTLEKRVLLYERACSE
LPGSYKIWKAYLEMRLAHLEGGSFVSNPQAFLDVNSCFERALVLLHRMPVMWHMYLKFVM
QQPDVTKVRKVFDAALRALPVTQHDDIWMLYLEFAEEIGGPFCIHVYRRYIQLEPRAVES
YIEVLVNLELWNEAAHQYLDILNRPVFLSSKGKSNYQIWNEFSQLIVQHPEDIEQIDVER
VFRAGIHRFTDQAGKLWTSLAQYYIRLGYYEKARSIFYEGITTVMTVRNFTQVFDAAVEF
EEQWLSMRVENKPSQLKDEIGVDYHLSWLEKLLDQRSLYINDVILRQNINNVDEWQRRTT
LVGDDREKIVQIYAEGLQKINPKLSIGSFGSFFSNFAKFYEDIGDVEQAKVIYEKATNVP
YNSVNELAQVWINWAEMELKYQNFETARKLIGDAVQAPKRSNISFFDEALSPQVRLHKSA
KIWMYYLDLEESVGSVDSTRKLYDRMFELKIATPQVVVNYANFLEENGFYEDSFKIYERG
VALFSYPVAFELWTLYLVKFIERYKGKQFERGRDLFEQALEGCPSEFSKSIYLLYADYEE
NYGKVKRSISVLEKALKDVTPKDRLSVFNVLLLKVAFNYGALATRPIYERAIEILNDEEV
KDVCLRYAEMETRLGEIDRARAIFTHGSQYCDPRVETEYWQRWQDFEVKYGNPEETVKEM
LRIKRSIQVKFSTNTLNIAKQVASMETPLTSGDAMEQLELSQENSKPLAGFVASSTGPMG
GIQQTNVVEQEPKNPDEIDLG
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagaccgctcaattaaaagtgcattccgatttattagatatagaagatgagcca
tttgaactggagttgcttcgtagtccgtattctttaagaagttggctacgatacttgtca
gcacgcgaaaattctacacttgaaaagcgtgttttgttgtatgagcgagcatgttcggaa
ttacctggaagttacaagatatggaaagcatatttggaaatgcgattagcacatttagag
ggcggatcgtttgtttcaaatccacaggcttttctagacgtgaatagttgttttgaacga
gcattagttcttcttcaccgtatgccggtcatgtggcatatgtacttgaagtttgtcatg
cagcagcctgatgtaacaaaagttcgcaaggtatttgacgctgctcttcgtgctttacca
gtgacacagcacgatgatatatggatgctatatttggaatttgctgaagagatcggtggc
ccattttgtatccatgtgtatagaaggtatattcaacttgaacctcgcgccgtcgagtcc
tatatagaagtattggttaatttagagctatggaatgaagccgcacatcagtacctggat
atcctgaatcgaccggtttttctttctagcaaagggaaaagtaattatcagatatggaac
gagttttcacagttaatcgtacagcatcctgaggatatagaacaaatcgatgttgaacgc
gttttccgggcgggtattcatcgtttcaccgatcaagctggtaagctgtggacttcttta
gctcagtattatattcgtttgggatattatgaaaaggcaaggagtatcttttatgaagga
attactaccgttatgactgttcgcaattttacccaggtatttgatgcagctgttgaattt
gaggaacaatggctctccatgcgagtggaaaacaagccttctcaattaaaagatgaaatt
ggggtggactaccatctatcttggttagaaaaactactcgatcaacgctctttgtatatt
aatgatgttattttacgacaaaatattaataatgttgacgaatggcagcgtcgaaccacc
ttggtcggcgatgatcgtgaaaaaattgtacaaatctacgctgaaggcttacaaaaaatc
aaccctaaattatctatcggttcatttggttctttcttttcaaattttgctaaattttat
gaggatattggcgatgttgaacaggctaaagttatttatgaaaaagccaccaatgtgccg
tataattctgtaaatgagctggctcaggtgtggattaattgggccgaaatggagttgaaa
taccagaattttgaaactgctagaaaattaattggggatgctgtccaagctcctaaaaga
agcaacattagcttctttgatgaagctttatctccccaggtcagacttcataaatctgcc
aaaatttggatgtattatttggacttggaagaaagcgttggatcagtagactcgacgcga
aagctttacgaccgcatgtttgaacttaaaattgcgacaccacaggtagtggttaattat
gcgaactttttggaagagaacgggttttacgaagactcatttaaaatctatgaaaggggt
gttgctcttttcagctatcctgttgcgtttgagttatggacactttacctagtaaaattc
attgaacgatataagggaaaacagtttgaaagaggtagagatctttttgaacaagcatta
gaaggctgtccatctgaattttctaaaagtatttatttgctttacgcggattatgaggaa
aactacggcaaggttaaaagatctatatcagtattagagaaagctttgaaagatgttact
cccaaagatcgccttagcgtctttaatgttttattgctcaaggtagcatttaattatggt
gcactagctactcgtccgatttatgaaagagccattgaaatacttaatgacgaagaagta
aaggatgtgtgcctacgctatgcagaaatggaaacacgattgggtgaaattgatcgtgct
cgtgctatctttacccatggaagtcagtattgtgacccacgggtagaaactgagtactgg
caacgttggcaagattttgaagttaaatacggaaatccagaagaaaccgtcaaggagatg
cttcgtattaaacgctctattcaagtgaaatttagtacaaatacattaaatattgcaaaa
caggttgcctctatggaaacacctttaacatccggggatgctatggaacagttggaatta
tcacaggaaaactctaaacccttagcaggatttgttgcttcaagtacaggaccaatggga
ggtatacagcaaacgaatgttgtggaacaagaaccaaaaaaccctgacgaaatagactta
ggctaa
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