Schizosaccharomyces osmophilus (fission yeast): SOMG_00557
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Entry
SOMG_00557 CDS
T09274
Symbol
rfc1
Name
(RefSeq) DNA replication factor C complex subunit Rfc1
KO
K10754
replication factor C subunit 1
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03030
DNA replication
som03410
Base excision repair
som03420
Nucleotide excision repair
som03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SOMG_00557 (rfc1)
03410 Base excision repair
SOMG_00557 (rfc1)
03420 Nucleotide excision repair
SOMG_00557 (rfc1)
03430 Mismatch repair
SOMG_00557 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
som03032
]
SOMG_00557 (rfc1)
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_00557 (rfc1)
DNA replication proteins [BR:
som03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
SOMG_00557 (rfc1)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
SOMG_00557 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
Rad17
AAA_22
AAA_14
RuvB_N
SAGA-Tad1
nSTAND3
AAA_16
BRCT_2
AAA_18
AAA_33
NTPase_1
AAA_5
Motif
Other DBs
NCBI-GeneID:
80874040
NCBI-ProteinID:
XP_056036757
UniProt:
A0AAF0AW21
LinkDB
All DBs
Position
1:join(1201627..1201698,1201753..1201886,1201946..1201987,1202052..1204596)
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AA seq
930 aa
AA seq
DB search
MNNSDIRSFFGGGNKQKKQPAAPQNDSSSANHSQKKKRVVVSDDESTDVDSRPASNGSAK
ENSPSTQKRQKVNAAPSATEPETTVDKKPDIPIEDSSDVLANDRPISSPVVSVPRTSSRV
GKTSSPHLESSKEVKEEENELPSAPATKRTRRALPPSISETPEVPEPAAPPVPKKSNVKL
KNLPRFSPEATKIMQSVPLIDIDSIGVMAPGGFYDRADTTQAPGSKAIPTGNDNCLSGLS
FVITGILETLTRQEATDIVKQYGGKVTGSPSNKTDFILLGENAGPRKVETIKHHKIPAIN
EDGLFYLLKTLPPLGGSGAAAQAAQVKREQEDVKIRETAARLAPDTAAQKVQPTNQLWTT
KYAPTSLKDICGNKGVVLKLQKWLQDWPKNLKSNFRKPGPDGLGLYKAVLLSGPPGIGKT
TAAHLVANLEGFDILEFNASDTRSKRLLDEQLQGVTDSHSLAGYFSSAYVPVDQSKSRLV
LIMDEIDGMSSGDRGGVGQLNVLIKNTKVPIICVCNDRSHPKLKPLDRTTFDLRFRRPDA
NSLRSRVMSIAYREGLKLSPQAVDMLVQGTSSDMRQIVNLLSTWRLGSKEMNVQNSQSAV
KQAEKHIVMKPWDICSRYLHGGLYHPSSKATINDKLELYFNDHEISYLMVQENYLSTTPD
RTRQEPPKMANLKHLELISKAAESFSDSDLVDSMIHGPQQHWSLMPTHALLSCVRPASFV
AGSGSRQIKFTSWLGNNSKTNKLNRVLREIQLHMRLKVSANSLEVRQHYIPILYESLAMR
LSRDQGEAIPDIIQLMDEYFLNRDDFDAIMEVVLPADVGEQLMKGVPTTVKSAFTRKYNS
SNHPVAFIGSSDVLPTKGSRAPEVPDVEDALEAEDEVVEAESEKEEDDTDLSKDKFISVP
KKPAKTTRKPKADAGSSTSAPSRRGRKKTT
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgaataattctgacattcgaagctttttcggcggtggaaataagcaaaaaaaacaaccc
gcagctccccaaaacgattcttcaagcgcaaaccattcacaaaagaagaaacgtgttgtt
gtttctgacgatgagtctacagacgttgattctcgtccggcttccaatggttccgcaaag
gaaaatagtccatcaactcaaaaaagacaaaaagtaaatgctgctccgtcagcaactgaa
cctgagaccacagttgataaaaagcctgatattcctatagaggattcttctgacgttctt
gctaatgatcgcccaatttcgtcgccagtcgtatctgtaccaagaacttcctcgcgagtg
ggtaagacttcctctccacacttggaatcttcgaaagaggtaaaagaagaagaaaatgag
cttccttcagctcctgcaactaaacgaacccgtcgcgcccttcctcctagcatttcagaa
acgccagaagtcccagaacccgcggctcctcctgtcccgaagaagtcaaatgtaaagctt
aaaaatcttcctaggttttctcctgaggctacaaagattatgcagtctgtgcctctgatt
gatatcgattccattggtgttatggctcctggtggtttttatgatcgtgccgacactaca
caagccccaggatcaaaggctattcctacaggaaatgataattgtctttcaggtctaagc
ttcgtaattacaggcattctagaaactttgacccgtcaagaagcaaccgatatagtaaaa
caatacggtggaaaagtgaccggttcgccttcgaataagacagactttattcttttgggc
gagaatgccggtccccgtaaagtcgaaacgataaaacatcataaaattccagcgataaat
gaggatggtcttttttatttactcaagactcttcccccattaggtggctctggagcagcc
gctcaagctgctcaagtaaagcgtgaacaagaagacgtgaaaattcgtgaaactgcagcc
aggcttgctccagataccgctgctcaaaaagtacagcctactaatcagttatggacgaca
aagtacgctcctacctctttgaaggacatatgtggtaataaaggtgtagtgctcaagttg
caaaaatggttacaggactggcccaagaacttgaaatctaattttcgtaagccgggtcct
gatggtttaggtttatacaaagctgtgttgttatcaggacctccaggaattggtaaaact
actgcagcacatttagtagctaatctggaaggattcgatattttggaatttaatgctagt
gatacccgaagtaagcgtctactagatgagcaattacaaggagtgactgatagccattcc
ctggctggttatttttcctccgcgtatgtgccagttgatcaatccaaatcgcgcttggtt
ttaatcatggacgaaattgatggcatgtcttctggtgatcgtggtggtgtgggccaactg
aatgtccttataaaaaataccaaggttcctattatttgtgtgtgcaatgatagatcacat
ccaaaattaaaacctcttgatcggacgacttttgatttgcgttttcgacgtcccgatgct
aattcgctgcgttccagagtcatgtcgatagcatatcgtgagggattgaagctttcacct
caagcggtggatatgcttgttcaggggacgtcgtctgatatgcgtcaaattgtcaatttg
ctttccacttggaggttaggaagtaaggaaatgaacgttcaaaatagtcagtcagctgta
aagcaagctgaaaaacacattgtgatgaagccttgggatatctgcagtcgatatttgcat
ggcggattatatcatccttcaagtaaagctacgattaatgataaattggaattgtacttt
aatgatcatgaaatttcttatttaatggtacaagaaaattatctcagtacaacccctgat
cgaactcggcaagagccaccgaaaatggcaaacttgaagcatttggaattgatctccaaa
gccgctgaatctttttctgattccgatcttgtcgatagcatgatccatggcccgcaacag
cactggtcattgatgccaacacatgctttgttatcgtgtgtaagaccagcatcattcgtt
gctggatctggatccagacagattaaatttacctcttggttaggaaataattccaaaacg
aacaagcttaacagagtgcttcgtgaaattcagcttcatatgcgtctaaaggtgtctgcc
aattctttggaagttcgacaacattatattccaatattgtatgagtcattagcaatgcgc
ttatctagagaccaaggagaagcaattcctgatattattcaactaatggatgaatacttc
ttgaaccgtgatgattttgacgcaattatggaagttgtcttgcccgccgatgtcggtgag
caattgatgaaaggagtacctacaactgtcaagtctgcatttacgagaaagtataactct
tcgaatcatccagttgcttttatcggttcaagcgatgttcttcccacgaaaggttcacgc
gctccagaagtgccagatgtggaagatgctcttgaagctgaggatgaagttgtcgaagct
gaaagtgaaaaagaagaagacgatacggatttgagtaaggacaaatttatttctgtcccc
aaaaaaccggcgaaaacaacaaggaagcccaaggcagatgcaggatcatctacctcggcg
cccagtcgtcgaggcagaaagaaaacaacataa
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