Schizosaccharomyces osmophilus (fission yeast): SOMG_00600
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Entry
SOMG_00600 CDS
T09274
Symbol
tfb2
Name
(RefSeq) transcription factor TFIIH complex subunit Tfb2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03022
Basal transcription factors
som03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SOMG_00600 (tfb2)
09124 Replication and repair
03420 Nucleotide excision repair
SOMG_00600 (tfb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
som03021
]
SOMG_00600 (tfb2)
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_00600 (tfb2)
Transcription machinery [BR:
som03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SOMG_00600 (tfb2)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SOMG_00600 (tfb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
80874083
NCBI-ProteinID:
XP_056035298
UniProt:
A0AAE9W6W7
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All DBs
Position
1:complement(join(1297816..1298064,1298118..1298889,1298937..1299259))
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AA seq
447 aa
AA seq
DB search
MQAEFKSSINDFLEQLPNHARLYQKPAACLAVFRLLPILARQYVMSMLFNPMPVALSDFD
LWTKMSSKVYQSESFNKLVSMHIFQFDGQHIILNEEFRKQFITALTGGGNHNSFGVPCTD
EDKHHVDLDFLDKYAKETWETILHFMVGTPEGKYPGEGVLSLLRRGGLMTGPKNQLRITH
SGFQFLLQDINTQIWTLLLEYLKLSEDTHMDPIQVLHFLFMLGSLELGRDYSVDFLTDTQ
QIMLEDLREYGVVYQRKTTSKRFYPTRLATSLTTDSHALEGAKSDNDADKGFIIVETNYR
LYAYTSSPLQIAIIGLFANLRAKFSNLVVGVITRDSIRRALMNGIAAEQIITYFSTHAHP
QMRANVPLLPPTLVDQIYLWELEKNRLKATPGILFRDFLTDMEFDQAVEYAKELGVLVWD
SSIKRMFFITTAGAQPMIAFLKRKAVK
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcagaatttaaatcgagcatcaacgatttcctagagcagcttccaaatcatgca
agactgtatcaaaagccagcggcttgccttgctgtttttcgattattaccgattttggca
agacaatatgtaatgtccatgctttttaatcctatgcctgtcgctctttcagactttgat
ttatggacgaaaatgtcgagtaaagtatatcaatcagaatcatttaacaaacttgtgagc
atgcacatttttcaatttgatggacagcacattattcttaacgaggaattccggaagcag
tttattactgctctcaccggcggtgggaatcataattcatttggtgttccctgcaccgat
gaagacaagcatcatgtggatttagactttctagataaatacgcaaaggagacttgggaa
actattttacatttcatggtaggaacgccagagggtaaatatcccggagaaggagtccta
agtttacttcgaagaggaggtttaatgactggtcccaagaatcaattgcgaattacgcac
tcaggtttccaattccttttgcaagatatcaatacacaaatctggactcttttgcttgag
tatctcaagctttccgaagatacacatatggatcctattcaagttttacattttctattt
atgctaggaagtttggaattgggaagagattattctgtagatttcttgactgacactcaa
caaattatgctggaagatttacgagagtacggggtcgtgtatcaaaggaaaacgacatca
aagcgattttatcctacgcgtctcgcaacgagcttaacaactgactctcacgcactagaa
ggtgccaagagtgataatgacgctgacaaggggttcattattgtagaaacaaattatcgt
ttgtatgcctacacaagctcgcctctacagattgccatcataggtttattcgctaattta
cgagcgaagttttcaaatttggttgttggcgtgatcactcgtgatagtattcgaagagct
ctgatgaatggtattgctgctgaacaaattatcacatacttttctacgcatgctcatcca
caaatgagagcgaatgtacctttacttcctcctacattagtggatcagatctatttatgg
gaattagaaaagaaccgtttgaaggcgacaccaggaatactatttcgagactttcttact
gacatggaatttgaccaagccgtggaatacgcaaaagaactgggtgtccttgtgtgggat
agttcgatcaaacgcatgttttttattaccacagctggcgcgcagccgatgattgccttc
ttgaaaaggaaagctgtaaaataa
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