Schizosaccharomyces osmophilus (fission yeast): SOMG_00623
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Entry
SOMG_00623 CDS
T09274
Symbol
utp4
Name
(RefSeq) U3 snoRNP-associated WD repeat protein Utp4
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SOMG_00623 (utp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
som03009
]
SOMG_00623 (utp4)
Ribosome biogenesis [BR:
som03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
SOMG_00623 (utp4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_IFT122_1st
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR36-Utp21_1st
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EML
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_2nd
ANAPC4_WD40
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_ACSF4
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
PEP5_VPS11_N
Beta-prop_VPS8
Beta-prop_NOL10_N
DSE1_N
Beta-prop_HPS5
RMC1_N
ASA1
Beta-prop_DCAF4
CFAP251_N
KNTC1_N
Beta-prop_IFT140_1st
DNAI3_WD
PSMbeta
Motif
Other DBs
NCBI-GeneID:
80874106
NCBI-ProteinID:
XP_056035611
UniProt:
A0AAE9W8K7
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Position
1:1345590..1347719
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AA seq
709 aa
AA seq
DB search
MDIHRCRFVEYTPSPITALAFSHQLSSQDPLPSNLHLAVGRANGNIEIWTPKGDWCLKGV
LYGGINRSVEGLAWSVSDEELRLFSIGFSTSITEWNLRTGKPLVHQDSNAGAIWSISLHE
ETKTLAVGCDDGSCVLFDISGGRGVIEYKRTLMRQTSRILSLCWQGKNHIVGGCTDGIVK
VWDVESPNSTIIARMQVDRAKKGSRSLVWDVKPLKDNTIVTADSSGAVKFWNGKYFTLTQ
SFKLHSADALTLAVSSNDNIVFSSGIDRKTVQYTRDGGKREWVSNSFRRFHSHDVRCMSI
LECKTVDVLVSGGADMMLAVVPVRHFNAKHHRMIPAVPQKPRMAIATKARLFMLWEDHQV
LVWRIGSPGYRFLLKIVLPNEENIVHAAISQDGELLAVSTILTTKLYRVHYTDDKVYVES
IEDPFLANVGATLLQFTVDMKKLILISNESDIFLLDLSRIETHQLEVYEVSQPETKKAPS
KYRGSGQSACEGIATVSVSPDGDYFAVADLNGNTFCYSFSTLSYIELPRVNSFVRAMAFR
LDIPGRLAVVTAGNQVFEFDVQSRKLTEWSKTNSNNIPKPFAHLLDKPFGAFFDIQNPSR
FWIWSANYVSFFDLNLDLPAPRNAEKRKMDGTVDGASSTKQRSAVQNATSSSKFGTGASR
SFWITHKYRPMLLAGLVGSTELLVIERPIADILMSTDVPGTFNEHRFGA
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggatattcatcgttgtcgtttcgtcgagtacactccttcacccattactgctctcgca
ttttcgcatcaactctcttcacaagatcctttaccgtctaatttacatttggcagttgga
cgcgctaacggaaatatcgaaatatggacaccaaagggggactggtgtttgaagggtgtc
ctctacggcggtataaatcgaagcgttgaaggtcttgcctggagtgtgagtgatgaggag
ctacgtttatttagtattggattctctacttccatcaccgaatggaatttacgaaccggt
aagccattagtgcaccaagattctaacgctggtgccatttggtctatttcgcttcatgag
gaaacaaaaactttggctgtcggttgtgacgacggtagttgcgtcttgtttgacattagt
ggaggacgtggtgttatagagtataaacgcaccttgatgcgacaaacttctcgtatcctt
tctttatgttggcaaggaaagaaccatattgtcggtggatgtacagatggaattgtcaaa
gtttgggatgttgaaagtccaaattccacaattatagctcgaatgcaagttgatcgcgct
aagaaaggtagtcgttccctcgtatgggatgtcaaacccctcaaagataatacaattgtc
acggcggattcttctggagctgtcaagttttggaacggaaagtattttactcttacccag
tcgttcaagcttcattcggcagatgcactgactctagctgtttcgagcaatgataatata
gtgttttcctctggtattgatcgcaagacggttcagtataccagagatggtggcaagcgt
gaatgggtaagcaatagcttccggagatttcactcacacgatgttcgctgtatgtcaatc
cttgaatgcaaaactgtagatgttttagtttctggtggtgcagatatgatgcttgccgtg
gtgcctgttcgtcactttaacgctaaacatcatcgaatgataccagctgttccacaaaag
cctcgtatggcaattgctacgaaagctcgtttatttatgttgtgggaggatcatcaagtt
ttggtttggagaattggttctccaggttaccgctttctcttgaaaattgttttaccaaat
gaagaaaatattgtccacgcagcgatatcccaagacggagaattgcttgcagtatctaca
attctgaccactaagctctaccgtgtacattacaccgatgacaaagtttatgtggaaagt
attgaagatccctttttagcgaatgttggagcaaccttgttacagtttacggtagacatg
aagaaactcattttaattagcaacgaatctgatattttcttgcttgacttgagtcgaatt
gaaactcatcagcttgaagtttatgaggtatcccaaccggaaactaagaaagcaccttcc
aaatacagaggaagtggtcaaagcgcatgcgaagggattgctactgtctccgtatctcca
gatggcgattatttcgctgttgctgatttgaatggaaatactttttgttactcattttcg
accttgtcctacattgaattacccagagttaacagttttgtacgagccatggcttttaga
ctggatattcctggacgtttggctgtggtgacagcaggtaaccaagttttcgagtttgat
gttcaaagtcgaaagctgaccgagtggtccaagacaaattcaaacaatataccaaagcca
tttgcccatttattggacaagccctttggtgcattctttgatatacaaaatcctagccga
ttttggatctggtcagcaaactacgtatctttctttgacttaaatttagatcttccagcc
cctcgaaatgccgaaaaacgtaaaatggacgggactgttgatggtgcttcgtcaacaaag
caacgctctgctgttcagaatgctacatcttcatccaagtttggaactggtgcctcaagg
tcattttggatcacacataaatatcgtcctatgttattggctggcttagtaggatcaact
gagcttcttgtaatagagcggcccatagctgatatattaatgagcacggatgttccaggt
acatttaacgagcatagatttggcgcttga
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