Schizosaccharomyces osmophilus (fission yeast): SOMG_00642
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Entry
SOMG_00642 CDS
T09274
Symbol
dbp2
Name
(RefSeq) ATP-dependent RNA helicase Dbp2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SOMG_00642 (dbp2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
som03041
]
SOMG_00642 (dbp2)
03009 Ribosome biogenesis [BR:
som03009
]
SOMG_00642 (dbp2)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOMG_00642 (dbp2)
Spliceosome [BR:
som03041
]
Complex A
U1 snRNP components
U1 related factors
SOMG_00642 (dbp2)
Complex B
SOMG_00642 (dbp2)
Ribosome biogenesis [BR:
som03009
]
Eukaryotic type
Pre-60S particles
Helicases
SOMG_00642 (dbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
P-loop_SecA
DUF3626
Motif
Other DBs
NCBI-GeneID:
80874125
NCBI-ProteinID:
XP_056035796
UniProt:
A0AAF0AUN1
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All DBs
Position
1:join(1387390..1388701,1389483..1389853)
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AA seq
560 aa
AA seq
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MSYRGDSYNNQDGGYGGYGRGYSDGGNRGNYRGGGGGGGRFNSSRGSYGGGRDNFSSGGR
KNDFYESEAGANLEKKDWTNESLTPFQKDFYKEHEDVSNRSDAEVDAYRKEKEIVIHGLN
VPKPVTNFDEACFPNYVLKEVKQLGFEAPTAIQQQAWPMAMSGRDMVGISATGSGKTLTY
CLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECTKFGRSSRIRNTCVYGGVPRG
PQIRDLIRGVEICIATPGRLLDMLDANKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQ
IRPDRQTLMFSATWPKEVQRLARDYLNDYIQCTVGSLDLSASHTIKQVIQVVDNTEKSAR
LGRDIEDILKEHDNKVLIFTGTKRVADEITRFLRQDGWPALAIHGDKAQDERDWVLGEFR
SGKSPVMVATDVASRGIDVKGITHVINYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSD
NSKQAKELIGILREAKQEIDPKLEEMVRYSGGGRFGGGYRRGGGYGRGGGGFRRGGGGGY
GGRGRSFTGSNNQPLSHSKW
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacagaggagatagttataataaccaagacggtggctatggtggctatggcaga
ggctattcagacggaggtaatcgcggtaattatagaggaggaggcggcggcggcggtcgt
ttcaactcctctcgtggatcctacggaggcggcagagataacttttcatctggaggccgt
aagaacgacttctatgagtcggaagcaggtgctaatttagaaaagaaggattggacaaac
gaaagtttgaccccattccagaaagatttttataaggagcatgaagatgttagcaaccgt
tccgacgctgaagtcgacgcgtatcgtaaagaaaaggagattgttattcacggtttgaac
gtacccaagccagttacaaatttcgatgaagcttgtttccccaactatgttttgaaggag
gttaagcaattgggatttgaagcaccgactgccattcaacaacaagcctggccgatggct
atgtctggtcgtgatatggttggtatttcggctactggttctggtaagactcttacttac
tgtttacccgcaatcgtccacattaatgctcagccattgcttgctccaggtgatggtccc
attgttcttgttttggctcctactcgtgagttagcagtccaaattcaaactgagtgcacc
aagttcggtcgctcttctcgtattcgtaacacttgtgtttatggtggtgtccctcgtggt
ccccaaattcgtgacttaattcgtggtgtagaaatttgcattgctactcccggtcgtctt
ttggatatgcttgatgccaacaagactaatcttcgtagagttacttacttggttttggat
gaagctgatcgaatgttggatatgggtttcgaacctcaaattcgtaaaatcgttgaccaa
attcgtcctgaccgtcaaactttgatgttttccgctacatggcctaaggaggttcaacgt
ctcgctcgtgactacttgaatgattacattcaatgtaccgttggttctttggatttgtct
gcttctcacactatcaaacaagttattcaagttgttgacaatactgaaaagagtgcacgt
cttggccgtgacattgaagatattttgaaggagcatgacaacaaggttttgattttcaca
ggtacaaagcgtgttgctgatgaaattacccggtttttaagacaagatggatggcccgct
cttgccattcatggtgacaaggcccaagatgagcgtgattgggtattgggagagttccgt
tcaggaaagtctcctgttatggttgcaaccgacgttgcttccagaggtatagatgtgaaa
ggaattactcacgtcattaattatgacttccctggaaacactgaagattatgttcatcgt
attggacgtactggtcgtgctggcgctaagggtaccgcttacacgtacttcacttctgac
aattccaaacaagctaaggagttgattggaattttgcgtgaagccaagcaagagattgat
cccaaattagaagagatggtccgttactctggtggcggtcgtttcggtggtggatatcgc
agaggtggtggttacggtagaggaggaggaggattccgccgtggcggtggtggtggttac
ggtggacgtggccgctcctttacgggtagtaataaccaacctctcagtcactctaagtgg
taa
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