Schizosaccharomyces osmophilus (fission yeast): SOMG_00760
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Entry
SOMG_00760 CDS
T09274
Symbol
dhp1
Name
(RefSeq) 5'-3' exoribonuclease Dhp1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03008
Ribosome biogenesis in eukaryotes
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SOMG_00760 (dhp1)
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_00760 (dhp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
som03021
]
SOMG_00760 (dhp1)
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_00760 (dhp1)
03009 Ribosome biogenesis [BR:
som03009
]
SOMG_00760 (dhp1)
03016 Transfer RNA biogenesis [BR:
som03016
]
SOMG_00760 (dhp1)
Transcription machinery [BR:
som03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
SOMG_00760 (dhp1)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
SOMG_00760 (dhp1)
Ribosome biogenesis [BR:
som03009
]
Eukaryotic type
Pre-60S particles
RNases
SOMG_00760 (dhp1)
Transfer RNA biogenesis [BR:
som03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
SOMG_00760 (dhp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
80874243
NCBI-ProteinID:
XP_056035833
UniProt:
A0AAE9W940
LinkDB
All DBs
Position
1:1638040..1641009
Genome browser
AA seq
989 aa
AA seq
DB search
MGVPALFRLLSRKFHKVITPVVEAPTQTLPDGTEIGPDLSLPNPNGEECDNLYLDMNGIV
HPCSHPEDRPAPETEDEMMIAVFEYTDRIMAMVRPRKLLYIAIDGVAPRAKMNQQRSRRF
RSSREAAQKEAELEVCIEEAKKQGIPVDEEAMKKKAWDSNCITPGTPFMDTLAKSLKYYI
INKLNTDPCWRNTRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTRHVVYGLDADLIM
LGLATHEPHFRVLREDVFFQQGSTRKSKEERLGLKRLDETSETNKVPVKKPFIWLHVSVL
REYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRDGAVERLTEIWRT
CLPHMGGYLTLDGSVNLTRAEMILTAVGDQEDDIFKRLKQQEDRRNENQKRRAQRESNQN
DSSYLDDTIIQRSAKVESSQVTVAPSVDTSTENDTRPNKARKIDASAPENLVNLSERTSN
RSLSATNKDLINNRAANRLGLSNEAATTSSINKIAAANLKSQMVSNESLRAVPIEEVVSS
PTPSATDDIASSDPSGLATPIEPAPVSAGMKRKAEDNAGEETSTDTVRLHESGYRERYYE
QKFGFSVNDTDQLGETVRHYVHGLCWVLLYYYQGCPSWTWYYPYHYAPFAADFKNLSSID
VKFDVNQPFRPYEQLLGVLPAASRNNLPEKLQPLMTEADSEIIDFYPEDFVIDLNGKKFE
WQGVALLPFIDEHRLLSAVSRIYPSLSEDEARRNTNGSSLLFVSEHHPMYPEVVKQLYSK
KKQGKPLKLSGKVGHGIFGKVSNDDSILPNVSIQCPVDVTTADALQKYGNIENNQSLSLQ
YEVPKSNFVHKSMLLRGVKMPSRVLTPEDVSVVRAERSNAGRRNNGSFRGGGVRRGGFQG
HGAQRSSYQSQNNSYNQQTYTGVTNGFAQTGTQPPWNNSGSFPRSANAYSARGGYGQSGY
SYGNSNNRGNPYSYGHPPATGYNGKGAPR
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcactttttcgactattgtcgagaaaatttcataaagttattacgccc
gtagtcgaggcaccaacacaaacacttccggatggaacagaaattggaccagatctgagt
ctcccaaatccaaatggtgaagaatgcgataatctgtacctggacatgaacggtatcgtc
catccttgttcgcatcctgaagaccgaccggcacctgagactgaggatgagatgatgatt
gccgtttttgagtataccgatcgcattatggcaatggttcgtccgagaaagttactttac
attgccatcgatggtgtagcccctcgtgcaaaaatgaatcagcaacggtcacgtcgattt
cgatcctctcgtgaagccgctcaaaaagaagccgaacttgaggtttgtattgaagaagca
aaaaaacagggaattcctgttgacgaagaggcgatgaagaaaaaagcctgggatagcaat
tgcattacaccaggaacgccatttatggatacattagctaaatcattaaaatattacatt
attaataagctgaataccgatccttgctggagaaacactcgttttattttgtcagacgca
tctgtgccaggtgaaggtgaacacaaaattatggaatttatccgttcccaacgggtgaaa
ccagaatacgaccctaatactcgtcacgtagtatatggattggatgctgatttgattatg
ctcggtttggcgactcatgaaccacattttcgcgtactacgagaagatgtatttttccaa
cagggcagtaccagaaaatcgaaggaggagcgattaggcttgaagcgtttagacgaaaca
tcagaaacgaacaaggttcctgtgaagaaaccattcatttggctacatgttagtgttcta
cgggaatatttggaagttgagctctatgttcctaatttgcctttcccgttcgatcttgaa
cgagccattgatgactgggtatttttcattttcttcgtgggtaacgactttcttcctcat
cttccaagtttggatatccgtgacggtgcagtagaacgcctgactgaaatttggcgtact
tgccttccacatatgggaggttatttaaccttggatggatctgtcaatttaactcgagct
gagatgattttgactgccgttggcgatcaagaagacgacatttttaaacgtctcaagcag
caagaagaccgtcgaaatgaaaaccagaagcgtagagcacaaagagaaagcaaccagaat
gattcttcttatttggatgatacaattatacagcgctcagcaaaggttgaatcatcccaa
gtaactgttgctccttctgttgacacaagcacagaaaacgatacacggcctaataaagca
cgtaaaattgatgcctcggctcctgaaaatttggtgaatttgtctgaaaggacctccaat
agatctttaagtgcaacaaataaagatctcattaacaatcgtgctgctaatcgtcttggc
ctttccaacgaagctgcgactacctcctctatcaataaaattgctgccgcaaatttaaaa
tctcaaatggtttcaaacgaaagccttcgtgctgtgcctatagaggaagtggtttcgtct
cctacccctagtgcaacggatgatatagcaagctccgaccctagtggtttagcaactcct
attgagccagcacccgtttcagctggtatgaagcgaaaagccgaagataatgctggcgag
gaaacctctacagatacagttcgcttacatgagtctggatatcgagagcgttattatgag
caaaaatttgggttttctgtgaacgataccgatcagttaggtgaaacagtccgtcattat
gttcatggattatgctgggttttattgtattattatcaaggatgtccttcatggacttgg
tattatccatatcattatgcgccctttgctgctgattttaaaaatttatcttctattgac
gtgaaatttgatgtgaatcaacctttcagaccttatgaacaattattgggtgtacttccc
gctgcgagtagaaacaatttgccagagaagctacagcctttgatgacagaagctgattcg
gagattatcgatttttatccagaggactttgtcatagatttgaatggtaaaaagtttgaa
tggcagggtgttgcattgctcccgtttattgatgaacatcgattgttatctgcagtttcc
aggatttatccttcgcttagtgaagatgaagccaggagaaacacgaatggatcttcattg
ctgtttgtttcggaacatcatccgatgtacccagaagttgtaaaacaactatactcaaag
aagaaacaagggaagcctttgaagttatccggcaaagtgggacatggcatttttggcaag
gtaagcaatgatgattccatcttgccaaatgtttcaatacaatgtccagtggacgttact
accgctgacgcacttcaaaaatatggcaacattgaaaacaatcaaagtttaagcttgcag
tatgaagttccaaagtcaaattttgttcataagtccatgcttcttcgcggtgtcaaaatg
ccctctagggtattgaccccagaagatgttagtgttgtacgtgcggaacgaagcaatgct
ggacgccgaaacaatggctctttccgaggaggtggcgttcgaagaggagggtttcaaggt
catggtgctcagcgctcgtcttatcagtcacaaaacaatagctacaaccagcaaacatat
accggtgttaccaatggatttgcccaaacaggtactcaaccaccatggaacaactcaggt
agctttccaagatccgcgaatgcatatagtgcaaggggtggatatggacaatcgggctat
tcatatggcaattcaaataatcgtggtaatccttacagctatggacaccctccagctacg
ggttacaatggaaagggcgctcctcgatga
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