Schizosaccharomyces osmophilus (fission yeast): SOMG_00798
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Entry
SOMG_00798 CDS
T09274
Symbol
sen1
Name
(RefSeq) ATP-dependent 5' to 3' DNA/RNA helicase Sen1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Brite
KEGG Orthology (KO) [BR:
som00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
som03021
]
SOMG_00798 (sen1)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
SOMG_00798 (sen1)
5.6.2.5 RNA 5'-3' helicase
SOMG_00798 (sen1)
Transcription machinery [BR:
som03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
SOMG_00798 (sen1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
SEN1_barrel
AAA_19
Viral_helicase1
AAA_30
UvrD-helicase
DEAD
nSTAND3
UvrD_C_2
AAA_22
PurS
ResIII
BSMAP
Motif
Other DBs
NCBI-GeneID:
80874281
NCBI-ProteinID:
XP_056035330
UniProt:
A0AAF0ATX6
LinkDB
All DBs
Position
1:1721421..1726490
Genome browser
AA seq
1689 aa
AA seq
DB search
MAESDDQTCFEKLVLYKNAQHWFCSGLLDQYIRPIFLWMAKQPSPCFEWVLKCYDERLCG
CTSCIQSFYHLRDEALAKFSYLYSGDSMATLERRWDDWMLDSTLSNFKNVEETTLDFTAL
PSLVFNVFLNPRLMRNQEAYCQALNGFADLVSDWSSGVFLPGFFVMFFEETYSEVHEYIT
DFLKKTENLHLTSEVFDDVFSIILYQQTDEDKSSLLSPCSSEFWKRASTLFQLLPLNCVT
TLCESHFRDFFITELEDEAFSDEKFACLKIFSNSPSFWFASDIFDQLEGYLQKLLANVTV
VDDVNASSCGWAYVLASLFRFCLNDFVLIFPSWLKTFVHDDKVVDFIIYASFYALFDLLS
LDNSSPHSLNEVLLLIDNKNINLFSQESDYLNNLKVRSLLYDILFISWAHKALTKDPSFI
FDPTYKVSPFWNSIDFKDVNYTSRFFEGLSTCYFVHDIELSESTTPEKSVVLFSEIWQTL
SSHISSFLQSFSQRDSPEVASYMQNDLIFDTVLGFLLSPSQQLYADAFRIFQSFFGKVKN
KNEVMKKLVEDHFRGIVHGLVDASLHWQSAFTFFPALRIMRFVSNINKLFSTNNKVWNEN
DLSTLGAYWQCVWNILDLVHSNVARWSLCNSNDTVKASMKLALKLSMDLFQNDGLFIKFL
AKFDGLVLLGETSDALFSLTTWLKINDLEMREQVIDSLCMLFVKYSNFDYLFEDRTINFL
TDFIIRKQKAHLSADQCKRLAEVIVQASPEAKSILDENRLAEARKTKKQTELVSGNQFNK
KPEPPKREKTQNVSAPTDKKTSTPRMKMLDQLRQEYIARRAGHFAARDAAVSSRKATFEN
QKPPTNLLTEQDSDNEEVDESDRKEGLFSLAKANKVPEIRQAERRQIQLLSTPKNQLHPS
QARILSNRNAANTKARLFPNMSEFYSEILTWNPSYEAASPILKYHKSEGKIADTFRSIDQ
YMDVLQPMIFMECWSQIQATKKNLKFSPVEGIMIQRTAVNNFVDIGISVAPKDLYGYPLF
DTEIVSLAFSREEAHSMKGLCCFAKIEKIVRQENGTLVIVRTLPKLEMLNKLQGNVPLYF
LKLTNLSTFTRQYAAIRGLPYYHMADDIVQAKPCSQPIKHSPSEIKGAMSRYQVNDPQAK
AILSSLDNSGFTLIQGPPGTGKTKTIIGIVTALLVDSNRYHITRPGAQNSSTEPKQQMLL
CAPSNAAVDEVLLRLKRGFTLSNGEHYAPKVVRIGNPETINVSVRDTSLEYQTEKQLLEV
NQGAVDLGSLQELTRWRDVFYNCIQKIEDLEKQIDVARDMEEDTKALGQELQNSINEKNL
AEQKIEEFQSQSFTKNKEVDHLRKKAQKAILKQADVVCATLSGSGHDLVAHSFLNFSTVI
IDEAAQAVELDTIIPLRYGAKKCILVGDPNQLPPTVLNQKAASYNYSQSLFVRIQKIHSE
QMCLLSIQYRMHPHISYFPSMKFYDCRLKDGEGMAEKTKQVWHLNGQFSQYRLFDIRGQE
KISTTSSSYNVEEVGYVVQMYEKLVGSFPDVNFTGRIGVITPYRQQLHELRKAFKEKYGK
TIMSSVDIQTVDGFQGQEKDIIIFSCVKSYSKYSIGFLRDYRRLNVALTRARSSLFIVGN
LETLKTDDLWGSLVDDALRRKLVESPHLGSDGQLILVKNSSEKRPRPKDFEESSDKKQTI
SNGVSETSG
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atggctgaatcagatgaccaaacttgttttgaaaagttggtcctttataaaaacgcacaa
cattggttttgctctggattgcttgaccaatatattcgtccaatcttcttatggatggct
aagcagccttccccatgttttgaatgggtactgaagtgttacgatgagcggttgtgcggt
tgtacctcttgcattcaatcattttatcacctgagggatgaagctttggcgaaattttcg
tatctttattctggagattctatggcaaccctagaaagacgttgggacgactggatgctt
gatagtacactttccaactttaaaaacgtggaagaaacaacactcgatttcactgccctt
ccttccttggtgttcaatgtcttcctcaatcctcgtcttatgagaaatcaagaggcatat
tgccaagcattaaatggatttgctgatcttgtttccgactggtcttctggcgttttcctc
cctggattttttgtcatgttttttgaagagacttactctgaagtccatgagtatattacc
gattttctcaagaaaacagaaaatcttcatttgacctctgaagtttttgacgacgtcttc
tcaataattttataccagcaaaccgatgaagataaatcttcccttctctcaccctgttct
tctgagttttggaagcgtgcttctacgctctttcagctacttccgctcaattgtgtcaca
actttatgtgaatcccacttccgtgatttttttatcaccgaacttgaggatgaggctttt
tcggatgagaagtttgcttgcttaaaaattttttccaattctccttctttttggttcgca
tccgacatttttgatcaattagagggttatcttcaaaaactgttggcgaatgttacagtc
gtcgatgacgttaatgcttcatcttgtggatgggcttatgtgttggcttcattatttaga
ttttgtttgaacgattttgttctgatcttcccctcttggctaaaaacttttgtccatgac
gacaaagttgttgattttatcatctatgcttcattctatgctttatttgatcttttatca
ttagataatagctccccacattccttgaatgaggttttgttattgattgacaacaaaaat
atcaatctttttagtcaagagtcggattacttgaataatcttaaagttcggtccctactt
tatgacattttattcattagttgggctcataaagctcttactaaagatccgtcctttatc
tttgatcccacttacaaggtgtctccattttggaattcgattgatttcaaggatgtgaat
tatacaagtcgattctttgaaggattatcaacctgctactttgttcatgacattgagctt
tcagagtcaaccacgcctgaaaagtctgtggttttgttctctgaaatatggcaaacctta
tcaagtcacataagctcatttttacagtctttttcgcaaagggactctccagaagtggcc
agctacatgcaaaatgacttgatttttgataccgttttgggatttttactatcaccatct
caacaactctatgctgacgcttttcgtattttccagtcgttttttggaaaagttaaaaac
aagaatgaagtaatgaagaagctagttgaagatcatttccgtggcattgttcacggactg
gttgatgcatcccttcattggcagtcagctttcacattttttcccgctcttcgaataatg
cgttttgtcagcaatattaacaaattgttttcaaccaacaataaagtttggaacgaaaat
gatttatcaactttaggtgcttactggcaatgtgtttggaatattttagaccttgttcac
tcgaacgttgcaaggtggtcattgtgtaactcaaacgataccgtcaaagcatcgatgaag
ttagctttgaaattaagcatggacctttttcaaaatgatggtcttttcataaagttcctt
gccaaattcgatggtttagttttacttggtgaaacaagtgatgctctattttcgttaact
acctggcttaaaattaatgatttagaaatgagagagcaagttatcgacagtttgtgtatg
ctttttgttaaatactcaaactttgattatctatttgaagatcgtactataaatttcttg
actgatttcataattaggaagcaaaaagcacatttatcggctgaccaatgcaaacgcctc
gcggaagtgattgttcaagcaagtcctgaggctaaaagtattttggatgaaaaccgtctt
gcagaagctcgcaagactaaaaaacaaaccgaattggttagcggtaaccagttcaacaaa
aaaccggaaccgccaaagagagaaaagactcaaaatgtttctgcaccgactgataaaaaa
acttctactcctcgtatgaaaatgttggatcaattacgacaagagtatattgcgcgtcgt
gctggtcattttgctgcgcgagatgcagccgtgtcttccagaaaagcaacattcgaaaac
caaaagccccccaccaatttattgactgagcaagattctgataatgaggaggtcgatgag
agtgataggaaagaaggattgttttcactagctaaggctaacaaggtacctgaaattcgt
caagcggaacgtaggcaaatacagcttttgtctacacccaaaaaccaattacatccttct
caagcacgaatactatctaatcgaaatgcagctaatacaaaggctcgtctatttcctaac
atgtctgaattttatagcgaaattttgacatggaatcccagttatgaagctgcttctcct
atactgaagtatcataaatctgaaggaaaaattgctgatacattcagaagtattgaccaa
tatatggatgttttgcagcctatgattttcatggaatgttggagtcaaatccaggctacc
aagaagaatttgaaattttcccctgtagagggtattatgattcagagaacggctgtgaat
aactttgtcgatattgggatttcagtagcccccaaagacctctatggttatccgcttttt
gatactgaaattgtctctctagctttttcaagagaagaagcacattccatgaagggtctc
tgttgttttgctaaaattgaaaaaatcgtccgacaagaaaacggaactttggtaatcgtg
aggactcttccaaaattggaaatgttaaataagcttcaaggaaatgtacctttgtatttc
ttgaaattaacaaacttatcaacgttcactagacaatatgctgcaattcgaggattgcct
tattatcatatggcagatgatatcgttcaagcaaaaccttgttcgcaaccaattaaacat
tctcctagcgaaatcaaaggagccatgagccgttaccaagttaacgatccacaggcaaaa
gcaattttgtcttccctggacaacagtggctttactttaattcaaggtcctcctggtacg
ggtaaaacgaagacaattatcggtatcgtcacggctttattagttgattcaaatcgatat
catattactcggcccggtgctcaaaacagtagtaccgagcctaaacaacagatgttgcta
tgtgctcccagtaatgctgctgttgatgaagttttacttcggttgaaacgcggttttact
cttagcaatggcgaacattacgctccgaaggttgttcgtattggtaaccctgaaacaata
aacgtttctgtacgggatacttcattagaatatcagacagaaaagcaacttcttgaagtt
aaccagggagcagtagaccttggatctctccaggaacttacacgttggcgtgatgttttc
tataactgtatacagaaaatcgaggacctcgaaaagcaaatagacgttgcaagagatatg
gaagaagatacgaaagctttgggtcaagaattacagaacagcattaatgagaagaattta
gcagagcaaaaaattgaggagttccaaagtcagagttttacgaaaaacaaagaggtcgat
catttgcgcaaaaaggctcaaaaagctattttgaaacaggcggatgttgtttgtgctact
ttatctggtagtggtcatgatttagttgcacacagttttctaaacttttcgactgttatc
attgacgaggcagctcaagccgtagaacttgatactattatacccttacgttatggtgct
aagaaatgtattcttgttggtgatcctaatcaattaccaccgacagttctgaaccaaaag
gctgccagttataattactcccaatcactgtttgttcgtattcagaaaattcattccgaa
cagatgtgcttattgagtattcaataccgtatgcatccccatattagttatttccctagt
atgaagttttacgattgtcgtcttaaagatggagaaggaatggctgaaaagacaaagcaa
gtttggcatttaaatggtcaatttagtcagtaccgattatttgatattcgtggccaggaa
aaaatatctacaacgtcatcttcatacaatgttgaagaagttggatatgttgtacaaatg
tatgaaaaattggttggatctttcccggatgtcaattttacgggtagaattggtgtaatt
accccatatcggcaacaactgcatgagttgcgcaaggcattcaaagaaaaatatggaaaa
actatcatgtcctctgttgatattcaaactgtagatggtttccagggtcaggaaaaagat
attatcatcttctcatgtgtcaaaagctattctaaatattcaattggtttcttgagagat
tatcgtcgtcttaatgtagccttaactcgtgcaaggagttcactctttattgtcggaaac
ttggaaacgctgaagacagatgatttgtggggaagcttagttgacgatgccctacgacgt
aaactagtcgaaagtcctcatttgggctctgatggacaattaattcttgttaaaaattct
agtgagaagcgcccaaggccaaaagattttgaagaatcttccgacaagaaacaaactatt
tcgaacggcgtttctgaaacatcaggataa
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integrated database retrieval system
