Schizosaccharomyces osmophilus (fission yeast): SOMG_00845
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Entry
SOMG_00845 CDS
T09274
Symbol
cdc28
Name
(RefSeq) ATP-dependent RNA helicase Cdc28
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SOMG_00845 (cdc28)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
som03041
]
SOMG_00845 (cdc28)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SOMG_00845 (cdc28)
Spliceosome [BR:
som03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SOMG_00845 (cdc28)
Complex C
U4/U6.U5 tri-SnRNP related factors
SOMG_00845 (cdc28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
AAA_19
SRP54
Flavi_DEAD
AAA_30
ResIII
Motif
Other DBs
NCBI-GeneID:
80874327
NCBI-ProteinID:
XP_056036308
UniProt:
A0AAF0AVJ4
LinkDB
All DBs
Position
1:complement(1818202..1821402)
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AA seq
1066 aa
AA seq
DB search
MSLEQYVSDQAVALLGMSEPSVVEYIIAEASHSHSSQELFRKLVGFGMEEADSKVHEFAH
SLYSRIPKNKGKTSDDAYNYRKKRQREILQMENQNAKYELLLEPQQAERSSRLPPSDSKK
RKERRKEHKRDILRRKHDDDEWQSDEYEEEEEISNTATNQEEKLSEKKQSPEANFTIKNN
EEDERMHDLREREEFEERLRQRDLTTSTRDLVEDYSSKLSSEEVALRNLADDPDSRERLA
AELRKKSRQHYLKPRAQQQLELLGREIQDEELLFADEQLTKREIFELEKKKELLRIAEER
MNLNAQAAEYRMPEDYFTEQGKLDRRRKEAVLHQRYTDANDERQPATPFGAAEQAQWESQ
QISKALVYEDNMKAPTQEKQFDYVFDDSQKIDFLLESNMPGKSESGAEASAPVLSPAEIK
AISMEESRKSLPVYKFKDDLLKAIEAYQVLLVVAETGSGKTTQLPQFLHDAGYTKNNKKI
CCTQPRRVAAMSVAARVANEMDVRLGQEVGYTIRFENNTSEKTVIKYLTDGMLLREFLTE
PDLASYSVIIIDEAHERTLHTDILFGLVKDIARFRPDLKVLVSSATIDAAKFSSYFDEAP
VFYIPGRRFPVDIYYTPQPEANYIQAAITTILQIHTTQQAGDILVFLTGQDEIEIMSENI
QELCKILGKRIPEIILCPIYANLPSELQAKIFEPTPSGARKVVLATNIAETSITIDGVNY
VIDSGFVKQNVYNPRTGMESLVSVPCSRASADQRAGRAGRVGPGKCFRLYTRWTYNNELD
MVTSPEIQRTNLTNIVLLLKSLGINNLLDFDFMDSPPPETLMRSLELLYALGALNNRGEL
TKLGRQMAEFPTDPMLSKSLISSANYGCVEEVLSIIAMLGESASLFYRPKDRIMEADKSR
MNFVQPGGDHLTLLRIWNEWVDTDFSYQWSRENFLQYKSLCRARDVRDQLANLCSRVEIE
LTSNSADSLMPIQKAITAGYFSNAARLDRTGDSYRTVKSNQTVYVHPSSTMVEKKPKIII
YYELVLTSKEYCRQVMQIQPEWLLEISPHYFKPENIEEMYKSKKRR
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgtctttagaacaatatgtttcggatcaagcagttgcacttttagggatgtcagaacct
tcagttgtagagtatataattgctgaagcttctcattcacatagctctcaggagctgttt
cggaaattagtgggatttggcatggaggaagctgattccaaagtgcatgagtttgctcat
tctctgtattctaggataccaaaaaataaaggaaagacatcagacgacgcatacaattac
agaaaaaagcgacagagagagattctgcaaatggagaatcagaatgcaaagtacgaactg
ctattagagcctcaacaagcagagcggtcgagcaggttaccgccttcggactcgaagaag
cgtaaggaaagacgcaaggagcataaacgggatatattaagacgcaagcatgatgatgac
gaatggcaaagtgatgagtatgaagaggaagaagaaatctcgaatactgcaaccaaccag
gaggagaagctatctgaaaaaaagcaatcacctgaagctaattttactatcaaaaataat
gaggaagatgaacgaatgcatgacttgagagagagagaagagtttgaggagcgattaagg
caaagagacttgacgacttcaactcgagatttagttgaagattactcttcaaagctctct
tcggaagaagttgctttaagaaaccttgcggatgatccagactctcgagaacgactggct
gcggaactacgtaaaaagtctcgccagcactatttgaagccaagagcacaacagcagttg
gagcttttgggaagagagattcaagatgaagaacttttatttgctgatgaacaattaaca
aaacgagaaatctttgagttggaaaagaaaaaggagctattaaggattgctgaagagcgc
atgaacttgaatgcgcaagctgccgaatatcggatgcccgaagattacttcactgaacaa
gggaaattagatagaaggcgaaaagaggctgtcttgcaccaacgctacacggatgctaac
gacgagcgtcagcctgctaccccctttggtgctgccgaacaagcccaatgggagtctcaa
caaatctcaaaagctctcgtatatgaagataatatgaaagctcccactcaagaaaaacaa
tttgattatgtttttgacgattcacaaaagatcgactttcttttagagtccaacatgcct
ggtaaatctgagtcaggcgccgaagcatctgcacctgtactttcaccagccgaaataaag
gcgatttcaatggaggagtccagaaaatctttgcctgtttacaaattcaaggatgatttg
ctaaaggcaatcgaagcttaccaagttttgttggtagtagcagagacaggttcaggaaag
actacccagttgccgcagtttctacatgatgccggatataccaaaaacaacaagaaaatt
tgctgtacgcagccacgtcgcgtagccgctatgtctgttgctgctcgtgtagctaatgaa
atggatgttcgattgggccaagaagttggatataccattcgttttgaaaataacacttct
gaaaaaacggtaataaagtatttgactgatggaatgcttttacgagagtttctgactgag
ccagatcttgctagttactcagttataattatagatgaagcacatgaaagaacacttcac
actgatatcctatttggtctcgtgaaggatattgctcgatttcgccctgatctaaaagtc
ctggtttctagtgctactattgatgcagccaagttttcttcctattttgatgaggcgcct
gtcttttatattcctggtcggcggtttcctgttgatatttattatacccctcagccagag
gcaaactatatacaagcagctataactacaattttgcagattcatacaactcaacaggcc
ggcgatatattagtctttttgactggtcaagatgaaatagaaattatgtctgaaaacatt
caagaactgtgtaagattttagggaagagaatccctgaaatcattctttgcccaatttac
gctaatttaccctcggagttgcaagcgaaaatatttgagcctacaccgtctggtgcacgg
aaggttgttttggctacaaatattgcagaaacttctattactattgatggagtgaattat
gtaatcgattccggattcgttaagcaaaatgtgtataatccgagaacaggaatggaaagc
ttagtttctgttccctgctctcgtgcatctgctgatcagcgtgctggacgtgctggtcga
gttggacccggtaaatgttttcgtctttatactcgctggacttacaacaatgagcttgat
atggtcacgtctccggaaatccaaagaactaatttaaccaatattgtattacttttaaag
tcattgggaatcaataatttattggattttgattttatggattcaccacctccagaaaca
ttgatgcgatcattggagcttttatatgcactcggagctctaaataatcgaggcgaactc
acaaagctgggaagacaaatggcagaatttcctacggacccaatgctttctaaatcgttg
atatcatccgctaattatggatgtgttgaagaagtcctttctataatagctatgttgggt
gaatctgcttcgttattttatcgaccaaaagatcgtatcatggaggctgacaaatctaga
atgaactttgtacaaccaggtggtgatcacttaactttgcttcgtatatggaatgaatgg
gtagatacagatttttcctatcagtggtcacgagaaaactttctacagtataaaagttta
tgcagagctcgtgatgtgcgagatcagctcgcaaacctctgcagtcgtgttgaaattgaa
ttgactagtaattctgcagactcactgatgccaattcaaaaggcgataaccgctggatat
ttctctaatgcagcacgattagatcgtacaggtgattcatatagaactgttaaaagcaac
caaacggtatatgttcatccaagttctactatggttgaaaagaaaccgaaaattattatt
tattatgaacttgtcttgacgagtaaagagtactgtcgacaagttatgcagatccagcca
gagtggttattggaaattagtcctcattatttcaagcctgagaatatcgaggaaatgtac
aaaagcaaaaaaagaagatga
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