Schizosaccharomyces osmophilus (fission yeast): SOMG_00861
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Entry
SOMG_00861 CDS
T09274
Symbol
rpb1
Name
(RefSeq) RNA polymerase II large subunit Rpb1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03020
RNA polymerase
som03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SOMG_00861 (rpb1)
09124 Replication and repair
03420 Nucleotide excision repair
SOMG_00861 (rpb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
som03021
]
SOMG_00861 (rpb1)
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_00861 (rpb1)
Enzymes [BR:
som01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SOMG_00861 (rpb1)
Transcription machinery [BR:
som03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
SOMG_00861 (rpb1)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
SOMG_00861 (rpb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
80874343
NCBI-ProteinID:
XP_056035320
LinkDB
All DBs
Position
1:complement(join(1901448..1906328,1906381..1906487,1906541..1906600,1906649..1906724,1906765..1906837,1906886..1906911,1906948..1906962))
Genome browser
AA seq
1745 aa
AA seq
DB search
MSGIQFSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDETGQRPRVGGLLDPRL
GTIDRQFKCQTCGELIADCPGHFGHIELAKPVFHIGFLSKIKKILEGVCWNCGKLKIDPS
NPKYQETQRYRDPKNRLNAVWNVCKTKMVCDTGLSGGSDNFDPSNPTANLGHGGCGSAQP
TIRKDGLKLWGSWKKGKDESDLPEKRLLTPLEVHTIFTHISSDDLARLGLNEQYARPDWM
IITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSEYEQ
LLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVIT
GDPNLSLDELGVPRSIAKTLTYPETVTPYNIYYLQELVRNGPDEHPGAKYIIRDTGERID
LRYHKRAGDIPLRYGWRVERHIRDGDIVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSV
TSPYNADFDGDEMNMHVPQSEETRAEIQEIAMVPKQIVSPQSNKPVMGIVQDTLAGVRKF
SLRDNFLTREAVMNIMLWVPGWDGVVPPPVIVKPRPLWTGKQILSLVIPKGINLMREDDK
QGLLNPSDLGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPDTCKGFFNGIQQVVN
YWLLHNGFSIGIGDTIADADTMREVTRTVKEARSQVAESIQDAQHNRLKPEPGMTLRESF
EAQVSRILNQARDNAGRSAEHSLKNSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKR
IPFGFKHRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET
GYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSNEHFE
RKYKIDLMEDRSISQFMENSIDNDPDVQDLLDAEFTQLSKDRDLLCNFIFPKGDARWPMP
VNVQRIIQNACQIFHLESRKPSDLMPGDIIQGLNELMSKLKIFRGDDRITQDVQNNATLL
FQIHLRSKFAVKRVITEYHLNKVAFEWIMGEVESRFQQAVVSPGEMVGTLAAQSIGEPAT
QMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLSPHVASNMDLAKNIQTQ
IEHTTLSTVTSATEIHYDPDPQNTVIEEDKDFVEAFFAIPDEEVEENLWKQSPWLLRLEL
DRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCRIIRDDDRKTEEDDNLI
EEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKVIRQKDTGIFERGDEWVLETDGINLT
EAMAVEGVDSSRIYSNSFVEVLQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDV
MTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQMA
PMGTGAFDIYLDQGMLMNYSLNAPAASIAVGEYGKSQIPEGSATPYERSPMIDSGYLSSS
DAAAFSPLIQSGPEGRDGLGEYGNMLGASPFHSVKSPGYTSPFSSAMSPGYGLTSPSYSP
SSPGYSTSPTYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PSGHS
NT seq
5238 nt
NT seq
+upstream
nt +downstream
nt
atgagcgggattcagttttcaccttcatctgtcccccttcgccgggtcgaagaggtccaa
tttggaatcttgtctccggaggaaattcggtccatgagtgtcgcgaagattgaatttccc
gaaacgatggacgaaactggtcaacgtcctcgagtcggtggacttttggatcctcgtttg
ggcaccatagatcgtcaatttaaatgtcaaacatgcggtgaattgatagctgattgtcct
ggacatttcggtcatatcgaacttgctaaacctgtatttcatatcggatttttgagtaaa
atcaaaaaaattttagagggtgtttgctggaactgcggcaagctaaaaattgacccttca
aatccaaaatatcaagaaacacagcgatatcgtgatcctaaaaaccgacttaatgcagta
tggaacgtttgtaaaacaaaaatggtttgcgacactggcttgtctggtggctccgataat
tttgatcctagtaaccccacagcaaatctgggtcatggcggttgcggaagtgcccaacca
acgattcgtaaagatggattgaaattgtggggttcatggaaaaaaggaaaggacgaatcc
gaccttcctgaaaaacgtttacttactccacttgaagttcacactatatttacgcatata
tcttcagatgatttagcacggttgggccttaatgaacagtatgcacgcccagattggatg
attattaccgttttaccggtccccccgcctagtgttcgtccgagtatttcagtagacgga
actagccgtggtgaagacgatttaacacataaactatctgatataattaaagccaatgcc
aacgttcggagatgcgagcaagagggcgcgccagcccacatcgtgtctgagtacgagcag
ttattacagttccatgttgctacatatatggataatgaaattgcaggtcagcctcaagct
cttcagaagtcgggtaggcctctaaaaagcattcgtgctagacttaagggtaaagaagga
cgtttgcgtggtaacttaatgggtaaacgtgttgatttttcagctcgtactgttattact
ggtgatcccaatctatcgttagatgaattaggtgtaccacgtagtattgcaaagacctta
acttaccccgaaacggttactccttataatatttattatcttcaagaacttgttcgaaac
ggtccagatgaacatcctggagccaaatatattattcgcgatacgggtgaacgaattgat
ttaagatatcacaagagagccggcgatattcctttaagatatggctggcgtgtagaaaga
catattcgagatggagacatcgttatttttaacagacagccatcactacataaaatgagt
atgatgggtcacaagatacgagttatgccttattcaaccttcagactaaacttgtcagta
acttcaccttataatgctgattttgatggtgatgagatgaatatgcacgtaccacagtcc
gaagaaacacgagctgaaattcaggagattgctatggttcccaagcaaattgtttcacct
cagtcaaataagccagtaatgggtattgttcaggacacattggccggtgtccgaaagttc
tcattacgtgacaattttttaactcgtgaagctgtcatgaatattatgctttgggtacca
ggatgggatggagtcgttcctccaccggtaattgttaagcctagacctctgtggaccggt
aaacagattctgagcttggtgattcctaaaggtattaatttaatgagggaagatgacaaa
caaggtttgcttaacccatcagatttaggcatgctaatcgagaatggtgaaattatctat
ggtgttgttgacaagaaaactgtgggagcttcacaaggtggtttggtgcatacaatttgg
aaggaaaagggacctgacacgtgcaaggggttctttaatggtattcaacaagttgtaaac
tactggttactgcataacggatttagtattggtattggtgataccatagcagacgccgat
accatgcgtgaagtgactagaaccgtaaaagaagctcgttcacaagttgcagaatcaatt
caggatgcccaacacaatagattaaagcccgaacctggtatgacattacgtgagtctttt
gaagcccaggtttcacgcattctgaaccaagccagagacaacgctggtagatctgcagaa
cacagcttgaaaaattccaataatgttaaacaaatggtggcagccggatcaaagggttct
ttcattaatatttcacaaatgtctgcctgtgtaggccagcagattgtagaaggaaagcga
attccatttggttttaaacatagaacccttccccactttcctaaagatgatgattcacct
gagtctcgtggatttattgagaattcatacttgcgtggcttaacacctcaagaatttttc
ttccatgcaatggccggaagagaaggtctcattgatactgccgttaagaccgccgaaact
ggttatattcaacgtcgtcttgtaaaagcaatggaggatgtaatggtacgatacgatggt
accgtacgcaatgcaatgggtgacattatccagtttgcttatggtgaagatggtttggat
gcaaccctggttgaatatcaagtttttgattctctgcgcttatcaaatgagcatttcgaa
aggaaatacaagattgatttgatggaagacaggagtatatctcaatttatggaaaactca
attgataatgatccagatgtgcaagatttgcttgatgcagaatttactcaactttcaaag
gatagagatcttctgtgtaattttattttccctaaaggtgacgcaagatggccgatgccc
gtaaacgtgcaacgaattattcaaaatgcttgtcagatttttcatttagaatctcgcaag
ccatccgatcttatgcccggagacattattcaaggtttaaatgagcttatgagtaagctt
aaaatattccgtggtgatgaccggatcactcaagacgtacagaataacgccaccttgctt
ttccaaattcatttgcgctcaaaatttgctgttaagcgggttatcactgaatatcatttg
aataaagttgcattcgaatggattatgggtgaagttgaaagccgatttcagcaagcagtg
gtaagtccaggagaaatggttggtaccttagctgcgcaatctattggtgaaccggcaact
cagatgaccttaaacactttccattacgccggtgtttcctcgaaaaatgtaacgttgggt
gtgcctcgtcttaaggagattcttaacgtcgcaaagaatatcaagacaccgtctttgact
atatatttatcaccccatgtggcatctaatatggacttggctaagaatattcagactcaa
attgaacatactactttaagcacggtcacatctgctactgagattcattatgatcctgat
ccacaaaataccgtgattgaagaagataaagattttgttgaagccttttttgctattccc
gatgaagaagtagaagaaaacttatggaaacaatcaccgtggttattgagattagaactc
gatcgtgctaagatgcttgacaaaaagctaagtatgagtgatgtggccggaaagattgcg
gaaagttttgaacgcgatcttttcactatatggtcagaagacaatgctgataagttgata
attcgctgtcgtattattcgtgacgacgatagaaaaactgaggaggatgacaatctgatt
gaagaggacgtctttttgaagacaattgaaggacacatgttagaaagtattagtttgaga
ggtgttcctaacattacccgtgtttacatgatggagcacaaggttattcgccagaaggat
actggtatatttgaaagaggtgacgaatgggttttggaaactgatggaataaatttgacc
gaagcaatggctgtcgaaggtgttgattcctctagaatatattcgaactcatttgttgaa
gttttgcaaattcttggaattgaggctactagatctgcgttgcttaaggaacttaggaat
gttattgaatttgatgggtcttacgtaaattatcgacacttagctctcctttgtgatgtg
atgacttctcgtggacatttaatggcaattacgcgtcacggtattaaccgcgctgaaact
ggtgctttaatgagatgctcttttgaggaaactgtagaaattttaatggatgcggctgca
agcggagagaaagatgactgtaaaggaatatctgaaaatattatgctcggccaaatggca
ccaatgggtactggtgcatttgatatttatctcgatcagggcatgttgatgaattacagt
ttgaatgctcctgccgcttcaatagcagttggtgaatacggaaaatcacaaattcctgaa
ggttctgctacaccttatgagcgctcgccgatgattgattctggttatcttagctcatcc
gatgcagcagcattttcaccattgattcaaagcggacctgaaggtcgagatggtttaggt
gaatatggaaatatgctcggtgctagtcctttccactcagttaaatctcctggttatact
agccccttttcaagcgctatgagccctgggtatggcttaacgtctcctagttacagtcca
tcatcaccaggttactctacatctcctacctatatgccttctagtccttcgtactctcct
accagtccttcgtactctcccactagtccttcctattcccctacaagcccttcttactct
cctacaagtccctcctattcccctactagtccttcttactctcctacaagcccatcgtac
tctcctactagtccctcttactctcctactagtccttcctattctccaaccagtccttct
tactctccaaccagtccttcttactctcctacaagcccatcgtactctcctactagtccc
tcttactctcctactagtccttcatattctccaaccagtccttcatattctcctaccagt
ccttcatattctcctaccagtccttcttactctcctactagtccctcttactctcctact
agtccttcttattctccaaccagtccttcatactctcccacaagtccctcctattcccct
actagtccttcttactctcctacaagtccctcctattcccctactagtccttcttactct
ccatctggacattcgtaa
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integrated database retrieval system
