Schizosaccharomyces osmophilus (fission yeast): SOMG_00971
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Entry
SOMG_00971 CDS
T09274
Symbol
hrd1
Name
(RefSeq) Hrd1 ubiquitin ligase complex E3 subunit Hrd1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som04120
Ubiquitin mediated proteolysis
som04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
SOMG_00971 (hrd1)
04120 Ubiquitin mediated proteolysis
SOMG_00971 (hrd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
som04121
]
SOMG_00971 (hrd1)
Enzymes [BR:
som01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
SOMG_00971 (hrd1)
Ubiquitin system [BR:
som04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
SOMG_00971 (hrd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-RING_5
zf-ANAPC11
zf-C3HC4_3
zf-C3HC4_2
Spc29
zf-RING_16
Prok-RING_4
zf-C3HC4_4
BBS2_hp
zf-RING_4
zf-C2HC5
zf-P11
Motif
Other DBs
NCBI-GeneID:
80874453
NCBI-ProteinID:
XP_056036121
UniProt:
A0AAE9W9L1
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All DBs
Position
1:join(2129017..2129040,2129080..2130942)
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AA seq
628 aa
AA seq
DB search
MKFILYVLASILLFGLSVLLSLYSSANVYAATVMISQSPIHITIGLNVCLCLFFAIANAF
KAVLFGSLQTFELELLYEQFWITLTDAMLFVTTLSAPISISFFLLLSTLMFARVFHSICA
FRTERQQVQLTERQFHLFNRLTCAFLVLALLDITFVYLCSNNEYIGDTSTRILFICEFSV
LFVNLVTEVIKLGLYVFETRHPEQVWQEKSIYLFRLEVLRDALRLLAYSIVLVFQLSYVS
YPIYAIRQLYISFYSLFRRLREHARYRQATRDMDAMYPSATEEQLSSSDRTCTICREEMF
HPDFPPDNIEEMEPLPRGLDMTPKRLPCGHILHLHCLRNWLQRQQTCPICRRPVFGEQAP
SPAAATANPLPVPTPTAVEGTNQNTPRTFSPGSGLGNPNIQPTHTFRPGTTAPSWGQTQN
LHGTIPLRNGWSMLPIPGVHRIPANNSTNMPDGTTAEGHSVADPNVAGIIPPGWRMISGN
NHPVAPPLQHEAPGLGSPSVAVPNVDLQMQPPLHAAPLEMQRFSSPEANSIQSLHQKIDE
MRNMTDRLHYDMQELRSSVRNLGVLMNENAVTDGFMGLDQDRSNMLSNSRVREHFSQRPT
ASSSSSMDDDLTHRNPRNVQLETLDEDL
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcatactttatgtattggcttccattttgttgtttgggttgtctgtcttgtta
agtctatacagcagcgccaacgtgtatgctgcgacggtaatgatctcacagagtccaatc
catattacaattggacttaatgtttgtctctgcctcttttttgcaattgcaaatgcgttc
aaggcagtcctttttggatccctacagacgtttgaattggagctgctgtatgaacaattt
tggattactcttacagacgctatgctttttgtaaccactttgagcgctccgatatctatt
tccttttttttattgttaagcacgcttatgtttgctcgagtatttcattcaatttgcgca
ttccgaactgaaagacagcaggttcagttgacagaacgtcaattccatctctttaaccga
ctcacttgtgccttccttgttttggcacttttggacattaccttcgtgtatttgtgcagc
aataatgagtacataggcgatacttcgacaagaatactttttatctgtgaattttccgtg
ttatttgttaatttggttacggaggttataaagcttgggctttatgtttttgaaactcgt
catccggagcaggtatggcaagaaaagagcatctacctttttcgactagaggtccttcgg
gatgctttacgtcttcttgcatacagcatcgtacttgtttttcaacttagttatgtgagt
taccctatttatgcaattcgacaattgtatattagcttttattctctgttccggcgcctt
cgcgaacatgctcggtatcgacaagctactcgtgatatggatgctatgtatcccagtgca
actgaagagcaattatccagttctgaccgtacatgtaccatttgtagagaagaaatgttt
caccctgactttcctcctgataatatagaggaaatggagccacttcctagaggtttggac
atgacccctaagcgtttgccgtgtggtcacatccttcatcttcactgtcttcgaaattgg
cttcaaagacagcagacctgtccaatttgtcgtagacctgtctttggagaacaagcgcct
tcccctgcagctgctaccgcaaaccctctcccagttcctactcctactgctgtcgaaggt
acaaatcaaaacactccacgaacattttcacctggttcgggattaggaaatcctaacatt
caaccgacacatacatttaggccgggaactactgctccttcttggggtcagactcaaaat
cttcatggtacaatccctttgcgtaacggatggagtatgctccctatacccggtgtacac
cgtattcctgctaataactccacaaacatgcctgatggtacaaccgctgaaggacattct
gttgcagatccaaatgtagctggtattataccacccggatggcggatgatatctggaaat
aaccatccagttgctcctcccttacagcatgaagcgcctggtttaggaagtccttccgtg
gcggtgccgaacgtggatttacaaatgcagcctcccttacatgccgcacccctcgaaatg
cagcgattttcttctcccgaagcaaactccattcaaagtttacaccaaaaaatagacgaa
atgcgaaatatgaccgatcgcttgcattacgatatgcaagaactgcgttcatcagtacga
aatcttggagtactgatgaatgaaaatgctgttacagacggatttatggggcttgatcaa
gataggagcaacatgttatcaaattctagggtaagggagcacttcagtcagcggccaact
gcttcgtcgtcaagttcgatggatgatgatttgactcatagaaacccaagaaatgtacaa
ttagaaacactagatgaagacttataa
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