Schizosaccharomyces osmophilus (fission yeast): SOMG_00974
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Entry
SOMG_00974 CDS
T09274
Symbol
lsm5
Name
(RefSeq) Lsm2-8 complex subunit Lsm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
som03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SOMG_00974 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_00974 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_00974 (lsm5)
03041 Spliceosome [BR:
som03041
]
SOMG_00974 (lsm5)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SOMG_00974 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
SOMG_00974 (lsm5)
Spliceosome [BR:
som03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
SOMG_00974 (lsm5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
80874456
NCBI-ProteinID:
XP_056036126
UniProt:
A0AAF0AUZ6
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All DBs
Position
1:complement(join(2136203..2136229,2136294..2136360,2136406..2136529,2136638..2136662))
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AA seq
80 aa
AA seq
DB search
MSMTILPLELIDKCVGSNLWVIMKGEREFVGTLVGFDDYVNIVLRDVTEHDTIHGTTEKH
SEMLLNGNGMCMLIPGGKPE
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgactattttacctttagagttaattgacaaatgcgttggatcaaatttatgg
gtgattatgaagggtgagagagaattcgtgggcactttggttggctttgatgattatgtg
aacattgtcttgagagacgttaccgaacatgacacgattcatggtacaacagaaaagcac
tcggaaatgcttctaaacggaaatgggatgtgcatgttgataccgggaggcaaacccgaa
taa
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