Schizosaccharomyces osmophilus (fission yeast): SOMG_01025
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Entry
SOMG_01025 CDS
T09274
Symbol
ste13
Name
(RefSeq) ATP-dependent RNA helicase Ste13/Dhh1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_01025 (ste13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_01025 (ste13)
03036 Chromosome and associated proteins [BR:
som03036
]
SOMG_01025 (ste13)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOMG_01025 (ste13)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
SOMG_01025 (ste13)
mRNA degradation factors
5'-3' decay
Decapping complex
SOMG_01025 (ste13)
Chromosome and associated proteins [BR:
som03036
]
Eukaryotic type
Gene silencing
piRNA pathway
SOMG_01025 (ste13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAGidase
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
80874507
NCBI-ProteinID:
XP_056036487
UniProt:
A0AAF0AVT0
LinkDB
All DBs
Position
1:complement(join(2242168..2243485,2243533..2243582,2243664..2243768))
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AA seq
490 aa
AA seq
DB search
MTENLIQKFENTTLNEQDWKAQLQANNIDKRPKTEDVTKTRGTEFEDYYLKRELLMGIFE
AGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKADTKKNKIQTLILVPT
RELALQTSQVCKNLGKHMNAKVMVTTGGTTLRDDILRLNDPVHIVVGTPGRVLDLAGKGV
ANFSECMTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKAFMDKHLNK
PYEINLMDELTLRGITQYYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKI
TELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVVNFDFPKN
AETYLHRIGRSGRFGHRGLAISFISWADRFNLYRIENELGTEIQPIPSSIDPSLYVFPNG
NYQVPRPLTGTAEQTLAAHQARGQEFNNNRNNYRDNYRNHSGRGNGGGYRGGYGARRNPR
YGGPNPKSLS
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgactgaaaacttaattcaaaaatttgagaataccaccttaaacgaacaggattggaaa
gctcaattacaggccaataatatcgacaaaaggcccaagaccgaggatgtgacgaaaact
agaggtaccgaatttgaagattattatttaaagcgtgagcttttaatgggtattttcgaa
gcaggcttcgaacgcccttcccctattcaagaagaatccatccctattgcccttagtggg
cgtgatattcttgctagagccaagaatggtactggtaaaacagctgccttcgttattccc
tctttggaaaaagctgataccaaaaaaaacaagattcaaactttaattcttgttcctact
cgtgagttggctctccaaacttctcaggtttgcaaaaatttgggcaagcatatgaatgcc
aaggttatggttactactggtggtacgactctcagagatgatattttacgtttgaacgac
cctgtccatattgtcgttggcactcctggccgtgtacttgatttagccggaaaaggagta
gccaacttcagtgaatgtatgacctttgtaatggatgaagccgacaaattattgagccct
gaatttacccctattattgagcagctactatcttacttccctaaaaaccgtcaaatttct
ttatacagtgccaccttccccttgatagttaaagccttcatggacaagcatctcaacaag
ccttatgaaattaatttgatggatgaacttactttgcgaggtattactcagtattatgcg
tttgtcgatgaaagccagaaggtacattgccttaataccttgttctccaagctccaaatt
aatcaatccattatcttttgcaactctaccaaccgtgttgagttgctcgctaaaaaaata
accgagttgggttattcttgcttctactctcatgctaaaatgcttcaatcccaccgcaac
cgagttttccataatttcagaaatggtgtttgtagaaacttggtttgctctgatttgttg
acccgtggtattgatattcaagctgtaaatgttgttgtcaattttgattttcccaagaat
gccgagacctatcttcaccgtattggccgttctggtcgttttggacaccgtggtcttgct
atcagttttatttcttgggctgatcgtttcaacttgtaccgcattgaaaatgagcttgga
actgagattcaacctattccatctagcattgatccttctttgtatgtgttccccaatggc
aattaccaagttcctcgtcctttaactggcactgctgaacaaaccctcgctgctcatcaa
gctagaggccaagaattcaataataaccgcaacaattatcgcgacaactatcgcaatcat
tctggacgcggcaatggcggtggctatcgtggtggttatggtgccagacgtaaccctaga
tatggtggtcccaacccgaagtctttatcataa
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