KEGG   Schizosaccharomyces osmophilus (fission yeast): SOMG_01180
Entry
SOMG_01180        CDS       T09274                                 
Symbol
rad13
Name
(RefSeq) DNA repair nuclease Rad13
  KO
K10846  DNA excision repair protein ERCC-5
Organism
som  Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:som00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    SOMG_01180 (rad13)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:som03400]
    SOMG_01180 (rad13)
DNA repair and recombination proteins [BR:som03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     SOMG_01180 (rad13)
SSDB
Motif
Pfam: XPG_N XPG_I
Other DBs
NCBI-GeneID: 80874662
NCBI-ProteinID: XP_056037040
LinkDB
Position
1:2559608..2563174
AA seq 1188 aa
MGVSGLWNVLEPVKRPVKLETLNDKRLAVDASIWIYQFLKAVRDKEGNQLKSSHIVGFFR
RICKLLFFGIKPIFVFDGGAPVLKRQTLRKRQARRVDRQENAALTANKIYALQMRHQAMR
LEEESRKAEVEVDTSLQAKNQKLSSMSLDNNDVKPVLNNQKKYLKPDPYQLPEMDVSFDN
LNNAHDPRVMSQEELTNYAMNFGDIEDVNLFDFSSIDFDSSMFRSLPDTDKYSILSAARL
RSRFRMGLSTDQLAEMFPNRMDFSRFQIERLKERNDLTQRLMDFTGMNQFGPGRVAGEKN
REYILVKNEGAEGGWALGVISGTAKNDPIVIDEDAVKLSSTMGEDDDEAEFDDVPLPETQ
KQMNPRELVAAKLREVRERSFEEEDDSENKEIDEIMTQLATHESIESYNRDGTTNLFNLS
TEDIDNIRREVETNEDKKPKDVVFLEKKGKSESPERKLVEDDNTTNVPQKVEPKESIFMD
DLPTFDNKESDHALGPLPFKEMDWGKSLFFSGIKDKSLSSEQGSVNSVKKSTESEPVLGQ
ALNLEATSHKSDIENESVDNLLVPNNQQFDKGLKEQHPTDQQVEKSFGTICNDAVPIKEE
SPTLDSAISSSLENKGLKRSSPLLIKVNEGDYRHEYAKKEASHGDFELKAISTMTDNKNE
ADEKEDFAKMNKEDHSIEHINIPEELSDFNSKEETRTDMAENNNDVVEKEGHAKMDKEVY
SNEHTDSSQNLADNNSEQKATHKHSMDGITGEEEDDNLEVAQNLMDEEEDDMMIRMAEEE
KEYDRFVSELNKKNTDSNWDQEAFEKRIQELKVQKRTEKRDADEVTQMMIRECQELLRLF
GLPYIIAPQEAEAQCAKLLELKLVDGIVTDDSDVFLFGGTRIYRNMFNQNKFVELYLMDD
MKREFNVDQTKLIRLAHLLGSDYTLGLAKVGPVLALEILREFPGETGLFEFKQWFQRLST
GQATKEDLGTPVKRRISKLLGKVVIPPDFPNPMVDEAYLKPNVDESKQKFQWGIPDLDEL
RQFLMATVGWSKQRANEVLLPIIQDINRKEFEGTQSNLTQFFSGGNVFAPRVAYQFRSKR
MEHALSSFRPDQPDQNERDLSTSLGITDVDANEESEQNQMSDPLKQRIAKRKRMMQSRRD
SDSESSSEDEISSSSLSALSEQNKASAPLKTELSTKLTKKTSRVRKRQ
NT seq 3567 nt   +upstreamnt  +downstreamnt
atgggagtttcgggcctttggaacgtccttgaacctgtgaaaagacccgtaaagcttgag
actctcaatgacaagagactagcagtcgatgcatctatctggatataccagtttttaaaa
gccgtacgtgataaagaggggaatcagttaaaaagtagccatatcgttgggttctttcga
agaatatgtaaattacttttctttggtatcaagcccatctttgtttttgatggaggcgcg
cctgttctaaagcgtcaaactttaaggaagcgtcaagcaagacgagtcgacaggcaagaa
aatgcagctttaacggccaacaaaatttacgccctacaaatgaggcatcaggccatgcgc
cttgaagaagaaagtcgaaaggcagaagttgaagtagacacttctttacaggcaaaaaat
caaaaactgtcttcaatgtccttggataataacgatgtaaagcctgtcttaaataaccag
aaaaagtatcttaaaccagatccttaccaattgccagagatggacgtttcttttgacaat
ttaaacaacgctcatgacccccgtgtcatgtcacaagaagaattaactaattatgcgatg
aactttggtgatatagaggatgttaacttatttgatttttcaagtattgattttgattca
agcatgtttcggtccctcccagatacggataaatatagcattcttagtgcagcccggctt
cggtcacgtttcagaatgggtcttagtaccgaccaattggcagaaatgtttccaaatcgc
atggatttctctcgctttcaaattgaacgattaaaagaaagaaatgatttaactcaacga
ctcatggactttactggcatgaaccaatttgggccgggccgagttgcaggcgagaagaat
agagagtatattttggttaagaacgaaggtgccgagggtggttgggccctaggcgttatt
tctggaacagcaaagaatgatcctattgtcattgacgaagatgcggtcaaattaagcagt
acaatgggcgaagatgacgatgaagcagagtttgatgatgtgccacttcccgaaacgcag
aaacaaatgaatcctagagaattggtagcagcaaaattgagggaggtgagagagcgctca
tttgaagaggaggatgactcagaaaataaagagattgatgagatcatgacacagctagct
actcatgaatcaattgaatcctataatcgcgatggaactacaaacttatttaacctttct
acagaagatatagacaacattcgacgggaggtagaaacgaatgaagataaaaagcctaag
gatgttgtctttttagaaaaaaaaggtaaatcagaaagccctgaacgtaagcttgtcgaa
gatgacaacacaacaaatgtgccccagaaagttgaacccaaagaatcgatttttatggat
gatttaccaacgttcgataacaaagaaagtgatcatgctttaggaccattaccttttaaa
gaaatggactggggaaaatctttgtttttctcaggtattaaagacaaatcattatcatca
gagcaaggcagtgtgaattcagtaaagaagagtacggaatctgaaccggttttgggacaa
gcgcttaacttggaagcgacttcgcataaaagtgatattgaaaatgaaagcgttgacaac
ttgttagtacccaacaatcagcagtttgataagggattaaaagaacagcacccaaccgat
cagcaagttgaaaagtcgtttgggactatttgtaatgacgctgtacctattaaggaagag
tcaccaaccctagattcagccatttcttcttcgctcgagaataagggtcttaagaggtct
tctcctttactaataaaagtgaatgagggagattatcgtcatgagtatgcaaagaaagag
gcatctcatggagattttgaactaaaagcaatatctacaatgactgataataaaaatgaa
gctgatgagaaggaagattttgctaaaatgaataaggaagatcattccatcgagcatata
aatattcctgaagaattgtccgactttaattccaaagaagaaacaagaaccgatatggct
gaaaataacaatgacgttgttgaaaaggaaggtcatgccaaaatggataaggaagtttat
tccaatgagcatacagatagttcccaaaatttggctgacaataattccgaacaaaaagcg
acccataagcattcaatggacggaataactggtgaagaagaagatgataacttggaagtt
gcgcagaatttaatggacgaagaagaagatgatatgatgattcgcatggctgaggaagaa
aaggaatacgatcgatttgtatctgaattgaataagaaaaacactgattccaattgggat
caggaagctttcgaaaagagaattcaagaacttaaagttcaaaaacggacagaaaagcgt
gacgctgatgaagtgactcaaatgatgattcgagaatgtcaagagctacttagacttttt
ggtttgccttatattattgcgcctcaagaagctgaagctcaatgtgcaaaattgcttgaa
ttgaaattggttgatggtatcgtcacggatgattcagatgtttttctttttggaggaacc
aggatctatcgtaatatgtttaatcaaaataagtttgtagaattatacttgatggacgat
atgaagcgagagtttaatgttgatcaaacaaagcttatacgacttgctcatttactagga
agtgactacacactgggattagcgaaggtcggtccagtattggctttggaaattttgcgt
gaatttccaggtgaaactggcttgtttgaattcaagcagtggttccaacgactgtcaact
gggcaagcaaccaaggaagacctgggtacacctgtcaagagacgtatcagcaaattacta
ggaaaagtagttattcctccagattttccaaatccaatggttgatgaagcgtatttgaaa
ccgaacgttgatgaaagcaaacagaaatttcaatgggggatccctgatttagatgagttg
agacaatttttgatggcaaccgtgggctggtcgaaacaaagggcgaatgaagtacttctt
ccaattattcaagatattaatagaaaagaatttgagggaacacaatcaaacttgacacag
tttttctcaggcgggaacgtttttgctcctagagttgcttatcaatttcgaagcaaacga
atggaacatgctctttcatcttttcgaccagaccaaccagaccaaaatgaacgagatttg
tcaacttctttaggaattacagatgtcgatgcaaacgaggaaagtgaacaaaatcaaatg
tctgatcctttgaaacaaaggatcgctaagaggaaaagaatgatgcaaagccgaagagat
tccgactccgaatcaagttctgaggatgaaatatcgtcgtcttcacttagcgcactttct
gagcaaaacaaggcgtctgctccattaaaaactgaactttctaccaagttaactaaaaaa
acttctagagtacgtaagcgtcaataa

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