KEGG   Schizosaccharomyces osmophilus (fission yeast): SOMG_01482
Entry
SOMG_01482        CDS       T09274                                 
Symbol
clr6
Name
(RefSeq) histone deacetylase (class I) H3-K9 specific Clr6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
som  Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03082  ATP-dependent chromatin remodeling
som03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:som00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    SOMG_01482 (clr6)
   03083 Polycomb repressive complex
    SOMG_01482 (clr6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:som03036]
    SOMG_01482 (clr6)
Enzymes [BR:som01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     SOMG_01482 (clr6)
Chromosome and associated proteins [BR:som03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     SOMG_01482 (clr6)
   HDAC complexes
    Sin3A-HDAC complex
     SOMG_01482 (clr6)
    BRAF-HDAC complex
     SOMG_01482 (clr6)
    REST complex
     SOMG_01482 (clr6)
    SHIP complex
     SOMG_01482 (clr6)
    MiDAC complex
     SOMG_01482 (clr6)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     SOMG_01482 (clr6)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    SOMG_01482 (clr6)
  Chromatin remodeling factors
   NuRD complex
    SOMG_01482 (clr6)
SSDB
Motif
Pfam: Hist_deacetyl NIL DUF1256
Other DBs
NCBI-GeneID: 80874964
NCBI-ProteinID: XP_056036093
UniProt: A0AAE9W8U7
LinkDB
Position
1:join(3218460..3218499,3218545..3218606,3218653..3218703,3218751..3218868,3218914..3218944,3218999..3219042,3219085..3219130,3219180..3219414,3219457..3219549,3219597..3219705,3219748..3219888,3219938..3220046,3220094..3220152,3220206..3220285)
AA seq 405 aa
MGFGKKKVSYFYDEDVGNYHYGPQHPMKPHRVRMVHNLVVNYNLHEKMNVITPVRATLND
MTRCHTDEYIDFLHRVTPDTMEKFQPHQLKFNVGDDCPVFDGLYEFCSISAGGSIGAAQE
LNSGNAEIAVNWAGGLHHAKKREASGFCYVNDIALAALELLKYHQRVLYIDIDVHHGDGV
EEFFYTTDRVMTCSFHKFGEYFPGTGHIKDTGIGVGKNYAVNVPLRDGINDENYESVFKP
IISHIMQWFRPEAVILQCGTDSLAGDRLGCFNLSMRGHASCVRFLKSFKVPLICVGGGGY
TVRNVARVWTYETGILNDEELDENLPYNDYLQYYGPDYKLNVLPNNMENHNSRPYLDATI
AEIIENLRSLAFAPSVQMQPRPQDFTFEKKEEQKVATEEIMDERV
NT seq 1218 nt   +upstreamnt  +downstreamnt
atgggatttggtaaaaaaaaagtttcttacttttatgacgaggatgtcggaaattaccac
tatggtccacaacatcctatgaagccgcatcgtgtgcgaatggttcacaacttggtcgtg
aactacaatttgcacgaaaaaatgaatgttattacacctgttcgggctacactaaacgat
atgactcgctgccatactgatgaatacattgactttctacatcgagttacgccagatacc
atggaaaagtttcaaccccatcagttaaagttcaatgtcggcgacgattgtccagtattt
gatggcctctatgaattttgctcaatctccgctggtggatcgatcggtgcggctcaagaa
ttgaattctggtaacgctgaaattgcagtcaattgggctggtggtttgcatcatgcaaag
aaaagagaagcctcgggtttttgttatgttaacgatatcgcccttgcagcattggaactt
ttgaaatatcatcaacgtgttctttatatagacatcgacgtccatcatggcgatggtgta
gaagaatttttctatacgactgaccgagttatgacttgttctttccacaaattcggcgaa
tacttccctggaactggtcacatcaaggataccggtattggggttggtaaaaactatgca
gtaaatgtacctttgagagacggaataaatgatgaaaattatgaaagtgtttttaagcca
atcattagccatattatgcaatggttccgaccagaagcagtcattctacagtgcggtaca
gattcgttagctggtgatcgacttggctgctttaatttgtcaatgagaggtcatgcctcg
tgtgttcggtttttgaagagtttcaaagtgcctctgatttgtgtgggcggtggtggctac
acagttagaaatgtcgctcgtgtttggacttatgaaacaggaattcttaacgatgaagaa
ttggatgaaaatttgccgtataacgattatctacagtattatggacctgactataaattg
aatgtcttgccgaacaatatggaaaatcacaattcacgaccatatctagatgctacaatt
gcggaaattatagagaacctaaggagcctggcttttgctccaagtgtacaaatgcagcca
cggcctcaagattttacttttgagaaaaaagaggagcagaaggttgctacggaagagatt
atggatgaacgagtatga

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