Schizosaccharomyces osmophilus (fission yeast): SOMG_01567
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Entry
SOMG_01567 CDS
T09274
Symbol
rrp6
Name
(RefSeq) exosome 3'-5' exoribonuclease subunit Rrp6
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_01567 (rrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_01567 (rrp6)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
SOMG_01567 (rrp6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
80875049
NCBI-ProteinID:
XP_056035880
UniProt:
A0AAE9WAF3
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Position
1:complement(join(3419647..3421770,3421817..3422083))
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AA seq
796 aa
AA seq
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MDETRLFRNFMNTTAFCSELEKLDIPFYRSIDSEFSENLKNVSTRVLKNIQLLFSKVDKN
RASDFVDVEDIENRWMEVSDTLDILFEKTDYCLDKFKGLLKKPKIESSPLPAAAPKKQKK
EKLPYRMIHAAHLPKPQLRFQNSPNNDRDLNWFWKLTEKPNALVPLDKLVTQVESDPSLA
NSLPHPYGTEIKNNRYPPWVYEMTNPIDTGPVEETAPIWVDTEEALKDMLKELKESNAIA
IDLEHHDYRSFRGYVCLMQISNRKYDWVVDTLQLREELQCLNVVFTDPKIIKVLHGANMD
IIWLQRDFGLYIVNIFDTYCATKVLGFEGHGLAFLLKKYCDYEADKRYQMADWRIRPLPK
DMLSYAQSDTHYLLYIWDHLRNDLLENSTKRKENLLQTVENNSKQIALRKYEVEPYDPVY
GLGTDGWRNVLSKFGSTKIIGREAISIFRALHDWRDSTARKEDESVRYVMPNHLLTTIAA
NKPMETLDLLSISKQLTPLVRMYADEIVQVIRDAENAFNKKIDEEQAFGMTNEAVSFKTS
VASNAVEEYDKTAPNLDIFEPSKKNITALKKLMAKTSDLFTAQVTFPSTSNDRKEKLLSV
TEKISLNVSPNVEHQTTTVQEENFSKERSDESNLQNETTTEKQPEKGESEENSIVVRQLG
INKKKRPSSAMNTNMPSLDDTINPTDQALPVANDSEDMSSSKKKRQRKKKKKETQNAGSF
PVADSETQGGPTSSEAFDYSNQDNFLLKMDERKRVVRNQNEKSFNPLNRATQVRRNVKEL
KKPKVPEGKSTSFKKN
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atggatgagacaaggttgtttagaaattttatgaatactacggcattctgttctgagtta
gagaaattggatattcctttttacagatcaattgactcagaattcagcgaaaatttgaaa
aatgtttctacaagagttttgaaaaatattcagctgcttttttcaaaggttgacaagaat
agagcgtctgattttgtagatgttgaagatattgagaatcgatggatggaggtttctgat
accttggatattctttttgagaaaacagattattgcctagacaagtttaaaggtttatta
aagaaaccaaagattgagtcaagccctttgcctgctgccgctccaaagaagcagaagaaa
gaaaagcttccttacagaatgatacatgctgctcatttgccaaagcctcagctacgcttt
caaaattcaccaaataacgatagagatcttaattggttttggaagctcactgaaaaacca
aacgcgcttgtgcctttggataaacttgtaacgcaagttgaatcagaccccagtttggcc
aactctttgccccatccttatggaaccgaaataaagaataaccgataccctccttgggtt
tatgagatgacaaacccaattgatactggacctgttgaggaaaccgcccctatttgggtt
gataccgaggaagctttaaaggatatgctgaaagagttaaaagaaagcaatgctatcgca
atcgatttggaacaccacgattaccggtcttttcggggatatgtttgtcttatgcaaata
agtaatcgcaaatacgattgggtggttgatactttgcagctccgtgaagagttacaatgt
ttaaatgttgtcttcacagatcctaaaataataaaagtactccatggtgctaatatggac
attatttggttacaacgtgacttcggtctttatattgtaaacatctttgacacatattgt
gcaaccaaagttttggggtttgaagggcatggcttggctttccttctgaagaagtattgt
gactatgaggctgacaaacgataccaaatggctgattggcgaattcgtccattgccaaag
gatatgctatcctatgcgcaatctgacacccattacctattgtatatatgggatcacctt
cgtaatgacctacttgagaattctaccaagagaaaagagaacctcctacaaaccgtggag
aacaacagtaaacaaattgctcttcgtaaatacgaagttgaaccatacgatcctgtgtac
ggtctaggaacggacggttggcgtaatgtcctttccaaatttggttctacaaaaataatc
ggaagggaggcaatttcaatttttagagctttacacgattggcgtgacagtactgcacgt
aaggaagatgaaagtgtccggtatgttatgcccaaccacttgttaactactattgctgcg
aataaaccgatggaaactttagacctactttctataagcaagcagctcacccctcttgtc
cgtatgtatgccgatgaaatagtgcaagttatacgtgatgctgaaaatgcttttaataag
aaaattgatgaagagcaagcctttggaatgactaatgaagctgtttcatttaagacctcc
gtcgctagcaatgccgttgaagagtatgataagactgctcctaaccttgatatttttgag
ccaagtaagaagaatattacagccttgaaaaaattaatggccaaaacatcagatcttttt
actgctcaagtaacttttccatctacttcgaatgatagaaaggaaaaactgctgtccgtg
actgagaagatatctctgaatgttagtccaaatgtcgaacatcaaactactacagtgcag
gaagaaaatttttccaaagagcgttccgatgagtctaatttacaaaacgaaacaactact
gaaaaacaacccgagaaaggtgaaagtgaagaaaactccatagtcgtccgacaacttggc
ataaataaaaagaagcgtccatcttcagcaatgaatacaaatatgccatcgttggatgat
acaataaatccaacggatcaagccttgcctgttgctaatgatagcgaagatatgagttca
tcaaagaaaaagagacaaaggaagaaaaagaaaaaagaaacccaaaatgcaggttcattt
cctgttgctgattctgaaactcaaggaggtccgacttcaagcgaagcttttgactattcc
aatcaagataatttcctgttgaaaatggatgaacgaaagcgagttgtacgaaatcaaaat
gaaaagagctttaatccgttgaacagagctactcaggtaagacggaatgtcaaagagctt
aaaaagcctaaagtacctgagggaaaaagtacctcgtttaagaaaaattga
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