Schizosaccharomyces osmophilus (fission yeast): SOMG_01586
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Entry
SOMG_01586 CDS
T09274
Symbol
rrp4
Name
(RefSeq) exosome subunit Rrp4
KO
K03679
exosome complex component RRP4
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_01586 (rrp4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_01586 (rrp4)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SOMG_01586 (rrp4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
SOMG_01586 (rrp4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
EXOSC1
Motif
Other DBs
NCBI-GeneID:
80875068
NCBI-ProteinID:
XP_056035847
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All DBs
Position
1:3470335..3471327
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AA seq
330 aa
AA seq
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MVTILKPEETYAFTKEYERDEMDAKMAVPDEEDEMEVDEEDEYPEMELEGEAAGIKNMVA
PGQLITDDPQFMRGHGTYLEKGGIYASVTGVVQRVNKLISVRPFKTKYVPEIGDLIIGRI
TEVQPKRWKVDIGSKQDAVLMLSSINLPGGVQRRKLETDELQMRNYFQEGDRLVAEVQQY
FSDGSVSIHTRSLKYGKLRNGVFLKVPSSLVVRSKSHIFNLPGGVDLILSVNGYAWISKH
NKNQESSVSITRLEEEASEAIYSNENDEVDAYTRLNISRIYICVRALANRGLPLSEAAIL
NFYEASLLYGDLQQLTSPKILDQIAVEAMH
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggtgacgattttaaaaccagaggagacttatgccttcacaaaggagtacgaaagagac
gaaatggatgccaagatggctgtgcctgatgaagaagatgaaatggaagtcgatgaagaa
gatgagtatcctgaaatggaattagaaggggaggctgccggcataaagaatatggttgcc
cccggtcaactcatcactgacgaccctcaatttatgcgtggtcacggaacatatcttgaa
aaaggaggtatctatgcatctgtcacaggcgttgttcaacgtgtcaacaaactgatttcc
gtccggccgttcaagacgaaatacgtgcctgaaataggtgacttgatcattggtagaatt
accgaggttcaaccaaaacgctggaaagttgatattgggtctaaacaagatgctgttctt
atgctttcttcgattaacttaccaggaggtgttcaacgtagaaagctagagacagatgag
cttcaaatgcgaaattacttccaagaaggtgatcgtttggttgctgaagttcaacagtat
ttttccgatggatcggtttctatacatacaagatctttaaaatatggtaagctccgtaac
ggagtattccttaaagtcccatcttctttggtggttcgctcaaaatctcatatctttaat
ttgccaggtggcgtcgatttgattttgagtgtaaatggttacgcttggatttccaaacat
aacaaaaatcaagaatcatccgtcagtatcacccgcttagaggaagaggcttctgaagcc
atttattctaatgagaatgatgaagttgatgcctacacccggttgaatatatctcgtata
tatatttgcgtgcgcgccttagcaaatcgaggattgcctttaagtgaagctgccattttg
aatttttatgaagcttctttactttatggagacttacagcaattgacatctcctaaaatc
cttgatcaaattgccgttgaagcaatgcactag
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