Schizosaccharomyces osmophilus (fission yeast): SOMG_01654
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Entry
SOMG_01654 CDS
T09274
Symbol
pan2
Name
(RefSeq) PAN complex (poly(A)-specific ribonuclease) ubiquitin C-terminal hydrolase subunit Pan2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_01654 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_01654 (pan2)
Enzymes [BR:
som01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
SOMG_01654 (pan2)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SOMG_01654 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
SOMG_01654 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
Beta-prop_EML_2
WD40_CDC20-Fz
Tenui_NCP
WD40_Prp19
Motif
Other DBs
NCBI-GeneID:
80875136
NCBI-ProteinID:
XP_056035151
UniProt:
A0AAF0AU04
LinkDB
All DBs
Position
1:join(3620700..3620717,3620757..3620855,3620896..3621062,3621182..3621308,3621352..3621929,3621975..3623284,3623322..3624286)
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AA seq
1087 aa
AA seq
DB search
MDAWKEVARTNENNGVTACSLNTISFDPYSELIWSGHKNGQLKSSFGSGLNPYTQFVAHE
GPVHQVLPHERGIFSLSSNSLRLSNRTGTIRWRLSDSDGSDYRAMLYQSRTHPEIVMGGY
NQKLTVVNAERGTITHQRTLPNDIFIMRRNRLLCCGSTNGEILLCDPNSFNPVNRISAHT
GTISDIDTSGNLLLSCGYSSRHDSYMIDPFVKVWDLRNLSTLVPIPFPSGPSMIRMHPKL
STTAVVCSSSGQINIVDTGNPLDAKLMHVPLNSYLTHMDVSVTGDAIAFSDVEDTVHLWS
AMDTPSFTEMKYPIQLPDVVHEPPAVSFEEPLNKIGMPYYDSELLSSWSKYLVFDAGKPN
FDSNMFLARQIANSAMPLHQELKSFHRNQTINFPWLNRKTASQETTPKFHSEKQKDIMSG
KDSEESFSYFEEMEDTVSGPDTIPKFYQKPVIKYSRFGIEDFNFGFYNKTSFAGLETDIT
NSYCNPILQLLAYIPSFCKSAISHSLGPCGLESCLVCELGFLFAMLKESTGKNCQATNFL
RCFSASSFAQSLGIVIDEQSNAGAFDSSLIQKFTKFILTEIIRVTEYEDKNGGSSFPLDY
LSKSFCIREVQTHRCGICGITSRKCHSSMCMVDLEYPSQHLESIISFEWLLKLSLDHRVD
LPPSWCEYCLAHQPGLLRSNVRSIPDIFFINTQIKHHDHLKLWTREGWLPKLLYLRRVND
TVQCLSSRQVSLLGDDKPSVSVYGLRGVTYEIRGVDFASHFVAAIQVSDHLTTTNTANSQ
WYIFNDFLVKQISEEEAINVHGPWKIPAVLCYEKLDMRIPQWDDVSDFTLLYEPYFLNPV
APSMNKAVPLSTEDMLYPGMLIGIDSEFVALQREETEVRSDSTKSTIKPCKLSLARISVL
RGEGPQKGVPFIDDYVATDDDVMDYLTKFSGIHPGDLDPTLSKYNVVPLKVAYKKLRLLV
NAGCKFVGHGLQKDFRIINLLVPPEQVIDTVDLFFLSSRQRKLSLKYLSWYLLEEDIQLT
EHDSVEDALTALKLYDCFVKLKAEGKLEETLEEIYEVGKRYKFRPPSLSSLSLQDRSFYG
EDSFIMG
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atggatgcatggaaagaggttgctaggacaaatgaaaacaatggtgtaacagcatgttcg
ttaaatacaatctcatttgacccttactctgaattaatatggtctggtcacaaaaatgga
caacttaagtcgtcgtttgggtctggtttaaatccgtatacccagtttgtagctcatgaa
ggcccggtgcaccaggtgcttcctcatgagcgaggtattttttctctttcgagtaattca
ttgcgtcttagcaatcgtaccggaacaatccgatggaggctaagtgattctgatggttcc
gattatagagctatgttgtatcaatctcgcactcaccctgaaattgtcatgggaggatac
aatcaaaagttaactgttgtgaatgcagagagaggcaccataacacatcagagaacactt
ccgaatgatatattcatcatgcgcagaaatcgtttactttgttgcggctccactaacgga
gagattcttctgtgtgatccgaatagctttaatcccgtcaatagaatatctgctcataca
ggcacaatttctgatattgatacatctggaaatctccttctctcttgtggctattcttca
cgacacgattcatacatgatagaccccttcgtgaaagtatgggatttaagaaatctttcc
actttggtacctattccatttccctccggaccaagtatgattaggatgcacccgaaactt
tctactacagcggttgtttgctcaagctctggacaaataaatatagtcgatacagggaat
ccgcttgatgcaaaattaatgcatgttcctttgaattcttatttaacccatatggatgtt
tcagttactggtgatgcaatagctttttctgacgttgaagataccgtacacttatggagt
gctatggatacaccctcattcacagaaatgaagtacccgattcagctacctgatgtggtt
catgaacctccagctgtttcttttgaagaaccgttaaacaaaatcggaatgccgtactat
gattctgagcttctatcttcgtggtcgaaatacttagtttttgatgccggaaagccgaac
tttgattcgaatatgtttttagccaggcaaatagccaactcagctatgcctttacatcag
gaactgaaatcgtttcatcgaaatcaaacaattaattttccctggttaaaccgaaaaaca
gcctcccaagaaactactcctaagtttcatagcgaaaaacagaaagacattatgtctgga
aaggattcagaggaatctttttcatattttgaagaaatggaagatacagtatcaggcccg
gacacaatacccaaattttaccaaaagcctgtgataaaatatagcaggtttggaattgaa
gatttcaattttggcttctataataaaaccagctttgctggtttggaaacggatattact
aattcgtactgtaatcctatattgcaactacttgcgtacataccctctttttgtaaatca
gccatcagccattctttgggtccttgtggcctcgagagctgtttggtatgcgagttagga
ttcctgtttgccatgctaaaggaaagtactggtaaaaattgccaagccacaaattttctg
cgttgtttttctgcttcgtcatttgctcaatcgttgggaattgtaattgatgaacagtcg
aatgctggtgcttttgattcttctctaatccaaaaatttacgaaatttatcctgaccgaa
ataatccgtgtaacagaatacgaagataaaaatggaggttcatcgtttcctttagattat
ctcagcaagtcattttgtatacgtgaagtccagactcatcgttgtggcatatgtgggata
acaagtcgaaaatgtcattcatctatgtgcatggttgatttagaatatccctcacagcat
ttagagtcaatcatttctttcgaatggcttctaaaacttagtttagatcatcgagtagat
cttcctccaagttggtgtgagtattgtttggcccatcagcctggtttgcttcggtcgaat
gtacgatctattcctgacatcttttttataaacactcaaataaagcatcatgaccatttg
aagctgtggacaagagaaggatggttgcctaagttgctatatcttagaagagtaaacgat
acagtccaatgtttatcatcgagacaagtttcattactaggtgatgataagccttcggta
tctgtttatggtttacgaggtgtgacttacgaaatccgtggagttgactttgcttcacat
tttgttgctgcaattcaagtttctgatcatctaacaaccacaaatacagcaaacagtcag
tggtatatatttaatgatttcttagtgaagcagatctctgaagaggaagccataaatgtt
cacggtccttggaaaatcccagcggtgctttgctatgaaaaattagacatgagaattcct
caatgggacgatgtttctgatttcacccttttgtatgagccttatttcttgaatcctgtg
gcgccatcaatgaacaaagctgtaccactttcgaccgaagatatgctgtatccaggtatg
ttgattggcatagattctgaatttgtagctttacagcgcgaggaaacggaagtgagaagc
gatagtacgaaatcaacaatcaagccgtgtaagttatcgcttgccagaatctctgtactt
cgaggagaaggtcctcaaaagggagttccctttatagacgactatgttgcgacagatgat
gatgtgatggattaccttactaaattttctggtattcatccgggtgatttggatccgacc
ctctcaaagtataatgtggttcctttgaaggttgcttataaaaagttacggttgctcgta
aatgcgggatgtaaatttgtaggacatgggctacaaaaggatttccgaattattaatttg
ttggtgcccccagaacaggttattgatacagtggatttattcttcttaagctctcgacaa
cgcaaattatctttgaaatatttatcttggtatctactggaagaagatattcagctcact
gagcatgactccgttgaggatgcattgacggcattgaaactttatgactgttttgtaaaa
ctaaaggccgaagggaagctggaagaaacattagaagaaatatatgaggttggaaagcga
tacaaatttcgtcctccctcgttgtcatcattatcccttcaggatcggagcttttatggt
gaagactcctttataatgggttaa
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integrated database retrieval system
