Schizosaccharomyces osmophilus (fission yeast): SOMG_01680
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Entry
SOMG_01680 CDS
T09274
Symbol
upf1
Name
(RefSeq) ATP-dependent RNA helicase Upf1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03013
Nucleocytoplasmic transport
som03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SOMG_01680 (upf1)
03015 mRNA surveillance pathway
SOMG_01680 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_01680 (upf1)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
SOMG_01680 (upf1)
5.6.2.5 RNA 5'-3' helicase
SOMG_01680 (upf1)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
SOMG_01680 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
SOMG_01680 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
UvrD-helicase
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
Viral_helicase1
nSTAND3
UvrD_C_2
PhoH
AAA_25
PIF1
DacZ_P
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
80875162
NCBI-ProteinID:
XP_056035361
UniProt:
A0AAF0AU89
LinkDB
All DBs
Position
1:complement(3682371..3685163)
Genome browser
AA seq
930 aa
AA seq
DB search
MSIASMSLKSKYYQNGFDLNLTTAMNSINGLDTQMENLAVENRRRTECCAYCNVSNPNSI
VKCLHCNKWFCNTRGKSGASHIVIHLVRARHKQVSLHSESPLSDTTLECYNCGTRNVFLL
GFIPAKAKTVVVLLCRQPCAKSSLAKDMNWDLSQWQPIISDRQFLPWLITPPSEEEQKLA
SPITSQQIIRLEELWRKDSHATLEDLDKPIEDDSLPSVELRYKDAHEYQAILSPLIQAEA
EYDKRLKESQTQKDVAVRWDQAINRRYTTWFLLPKLESGEIRLAIGDEMKLTYEGELRPR
WSSTGYVIKIPNNVSDEVGLELKRSDNVPIECLHNFSVDYVWKSTSFDRMQVALKLFAND
GSRLSSYLYHKFLGHDIFPSSFKPKFPSDYSVPNLPKLNASQREAVRSVLSKPLSLIQGP
PGTGKTVTSASIVYHLATIQNRKRKSPLPVLVCAPSNVAVDQLAEKINRTGLRVIRVAAK
SREDIESSVSFLSLHEQIKNYQGNPELQRLFKLRAENNELSLQDEKRLRILIAAAERELL
RAAHVICCTCVGAGDKRVAKYRFRSVLIDEATQASEAECMIPLVLGAKQVVLVGDHQQLG
PVVMNKKVAQARLSQSLFERMIILGNSPFRLVVQYRMHPCLSKFPSNTFYEGTLQNGVTT
SERIARHVDFPWIQPDEPLMFYANFGQEELSASGTSYLNRTEASTCEKIVTRFLKCNVLP
EQIGIITPYDGQRSYIVQYMQNNGSMQKDLYKYVEVASVDAFQGREKDFIILSCVRSSEH
QGIGFLNDPRRLNVALTRAKYGVIVLGNPKVLAKHALWYHFVSHCKEEGCLVEGTLNSLQ
KFSMILIPPQKPQNFKRDLNVLRSLSPIQGAHNSLFPNLSNLQSLYSPSYLEEWNTFSQY
RRRESNVTDFEDFQSQVGDNESDIGDLTRF
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgagtatagcttccatgtctttaaagtctaaatactatcaaaatggtttcgacttgaac
ttgactacagccatgaattcaattaacggattggatactcagatggaaaatttagcagtt
gaaaacagaagaagaacagaatgttgcgcttattgtaacgtatcgaatccaaactcgatc
gtgaagtgcttacattgtaacaaatggttttgtaacaccaggggaaagtctggagcctct
catattgttatccatttagtgcgtgctcggcataagcaagtatcgctacacagcgagtct
cctctgtcggatacgactttagaatgctacaactgtggcactcgaaacgtgtttttgctc
ggtttcattccggcaaaagcgaaaacggtagtagtactactctgtcgacagccttgcgcc
aagtctagccttgccaaggatatgaactgggatttgtctcaatggcaacctattatctca
gatcgccaattcttaccatggttgattacgcctccttctgaagaagagcaaaaactcgcg
tctcctattacgtctcaacaaattattcgtttagaggaactttggcgtaaagactctcat
gcaactttggaagatcttgataaacccatcgaggatgattccctcccttctgttgaactt
cgttataaagatgcccatgaataccaagccattctctctcccctgattcaggcagaagca
gaatatgataaaagactcaaggaatcgcaaactcaaaaagatgttgctgttcgatgggat
caagctatcaatagaaggtatactacttggtttttgttacccaaacttgagtccggtgag
attcgactcgccatcggtgatgaaatgaagcttacctatgaaggtgagctgagaccacgt
tggagttcgactggatatgttataaaaattccaaacaacgtttctgacgaagttggttta
gagttgaagcgctctgataatgtccctatcgaatgcttacacaatttttccgtcgattat
gtatggaagtcaacctcttttgaccgaatgcaagttgctctgaaactttttgctaacgat
ggatctcgtttatcttcttacctttatcataaattccttggacatgatatttttccttca
tccttcaaaccaaagtttccctcggactattcggtacctaacctccccaaactcaatgct
agtcaacgtgaagctgttcgatctgttctgagtaaacctctttctttaattcaaggccct
ccgggtacaggtaaaactgtaacctccgcttcaattgtttaccatttggctactattcaa
aacagaaaaagaaaatctcctttacctgttttggtgtgtgctccctccaacgttgctgtt
gatcagcttgcagaaaagataaaccgcactggtttacgcgtgattcgtgttgctgctaaa
tctagggaagacattgaatcttcggtttcattcctttctttacacgaacaaataaaaaat
taccaaggaaatcctgagcttcaacgtctcttcaagttgcgcgctgagaataacgagctt
tccttacaggacgaaaagcggcttcgaattttgatagcagctgctgagcgcgaactgctt
cgagcggctcatgttatttgctgtacatgcgttggtgctggtgacaagagagtagcaaaa
tataggtttcgttccgtattgattgacgaagccactcaagcatctgaagcggaatgtatg
attcctttggttctaggtgctaaacaagtggttttggtgggagaccatcaacaattgggg
ccggtcgttatgaataagaaggtagctcaagcacggctttcgcaatcattatttgagcgg
atgattatcctaggaaactcaccatttaggttggttgtacaatatcgtatgcatccttgc
ctgtctaagtttccttcgaacactttctatgagggtactttgcaaaacggtgttacgacg
tccgaacgtattgctcgacacgttgactttccatggatccaacctgacgaacctttgatg
ttctatgctaattttggccaagaagaactgtcagcaagtggtacatcatacttgaatcgt
acagaagcatctacttgtgaaaaaattgttactcgcttcttaaaatgcaatgttctacct
gagcaaattggtatcattactccgtatgatggtcaacggtcttacattgtgcaatatatg
cagaacaatggctccatgcagaaggatctgtataagtatgttgaagtggcttccgtggat
gctttccaaggacgcgaaaaagattttattatattatcatgtgttcgttcaagcgagcat
caaggtattggatttttgaatgatccaagaagattgaatgttgcgttgactcgggccaaa
tatggtgttattgttttaggtaatcctaaggtattagccaagcatgccttatggtaccac
ttcgtttcacattgtaaggaggaagggtgcctggttgagggaaccctgaatagccttcaa
aagttttcgatgatcttgatcccaccccaaaaaccgcaaaattttaagagagatcttaat
gtcctgcgatcactatctccaattcagggagcccataattccttgttccctaatctttcg
aacctacagagcttgtattcaccttcataccttgaggagtggaacacattttctcaatat
cggcgcagagaaagtaatgttacagattttgaagattttcaaagtcaagtcggtgataat
gaaagcgatattggggatttgacacggttctag
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