Schizosaccharomyces osmophilus (fission yeast): SOMG_01790
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Entry
SOMG_01790 CDS
T09274
Symbol
spt5
Name
(RefSeq) DSIF transcription elongation factor complex subunit Spt5
KO
K15172
transcription elongation factor SPT5
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
SOMG_01790 (spt5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
som03021
]
SOMG_01790 (spt5)
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_01790 (spt5)
Transcription machinery [BR:
som03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
SOMG_01790 (spt5)
RNA polymerase I system
SOMG_01790 (spt5)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
SOMG_01790 (spt5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
Spt5-NGN
CTD
KOW5_SPT5
Spt5_N
KOWx_SPT5
KOW
KOW2_Spt5
KOW1_SPT5
KOW7_SPT5
Motif
Other DBs
NCBI-GeneID:
80875272
NCBI-ProteinID:
XP_056036083
UniProt:
A0AAF0AVC3
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All DBs
Position
1:3931993..3934857
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AA seq
954 aa
AA seq
DB search
MDGKVGNVDSREEKYPTGENDQEDLTQQTSPGASVGNDTEHLLVNSEEQGNVSDDQDDQE
RKEDADEEEPNGEKNQTNVAVDDEAEEDEDEEDEEALEEEEEEEDEEEAAGGRRKRARHE
RRNQFLDIEAEVDEDEEELDEEEEEIGREDGFIEEEVGGAEYVADDRRHRELDRQRQELQ
SVDAERLAEEYREKYGRSQTVISDTSNVPQRLLLPSVNDPNVWAIRCKAGKEKDVVFTIM
RKAMDLQYTSMPLEIISAFQRDSLVGYVYVEARKQSHVLAALNGILNVYTNNMILVPIKE
MPDLLKVQKQTVELLPGAYVRIKRGKYAGDLAQVDNLSENGLTARVRIVPRVDYSNSLKR
SKSITRPQARLFNESEAYKSNPTKFYRRGPRTFVFNNEEFEDGFLVKDIRISSLVTEGVN
PTLDEVSKFSPSNEDLDLSSLALSVKNDHAEFQVGDVVEVFVGEQAGVGGVVETVHGTVV
TIISNDGLRLDVPSRGIRKRFRHGDYVKVIAGKYKDDTGMVVRISKDEVTFLSDTMMTEL
TVFSRDLGEAGSAQAINSAYDLHDLVQLDVNTVGCVFSVERDTYRVVDQHGGVRTAKASQ
ITMRHSNRRGVATDRNGTEIRVGDKVKEVGGENKDGTILHIYRAFVFLHNRELMENNGVF
VARSRNVATVAAKGARISTDLTKMNPALNSGPSLPPVANIKRTIGRDKAIGATVRIRKGP
MKGLLGVIKDTTDANARVELHTGNKIVPVPKENLLYTSKTGDLITYTEFIERSRGIRPGS
IGNVDGPSVPSWAQGARTPAYANGAQSQGWQSGGKTPAWNSGAKTPAWNAGGKTPAWSSG
NKTPAWNAGSKTPAWNSGAKTPAWNAGAKTPAWNAGAKTPAWNAGGKTPSWNASGATNVA
GQAPVYGGFSETTWDTDDNNGSWAAPTPGGWAAPTPGGWNEDEGNSPNYVPPSP
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atggacggtaaagtaggaaatgttgattcaagagaagaaaaatatcccacaggagaaaac
gatcaagaagacttaactcaacagacatccccaggtgcgtccgttggaaatgacactgag
catttattagttaattctgaagagcaagggaacgtctcagacgatcaagacgaccaagaa
cgtaaagaagacgcagatgaagaagaaccaaatggcgaaaaaaatcaaacgaacgtcgca
gttgatgatgaagccgaagaagatgaggatgaagaagacgaggaagcattagaagaagaa
gaagaagaagaagacgaggaagaagcagccggtggtaggagaaaacgcgcacgtcatgaa
cgccgaaatcaattcctcgatattgaagcagaggtggatgaagatgaagaggaattggat
gaagaagaagaagaaattggtagagaagatggcttcattgaggaggaagttggtggagct
gagtatgtggccgatgatagacgacaccgagaactcgaccgccaaaggcaagaattacaa
tccgttgatgcggaacgtttggcagaagaatatagagaaaagtatggaaggagccaaact
gtcattagtgatacgagcaacgtccctcaaaggcttcttctaccttccgttaacgaccct
aatgtctgggctattaggtgtaaagcaggaaaagagaaagatgttgtttttaccattatg
agaaaagctatggatcttcaatacacgagcatgccattggaaattatctctgcatttcaa
cgtgattcgcttgttggctatgtttacgttgaggctaggaagcaatcgcatgtattggct
gctttgaatggtattctgaacgtctatacaaataatatgattttggtacctattaaggaa
atgccagatttactgaaagtccaaaaacaaaccgtcgagcttcttcccggtgcatatgta
cgtattaagcgtggtaaatatgccggtgatcttgctcaggtggataacttgtctgaaaat
ggtttaacagcccgtgtgcgtatagtccctcgcgttgattactcaaattcactaaagaga
agcaaatcaattactcgtccacaggctcgtttgtttaacgaaagcgaggcatacaagagt
aaccctacaaaattctatagacggggaccgagaacatttgtttttaataatgaggaattc
gaagacggtttccttgttaaagatatccgaatttcttctcttgttactgaaggtgtcaat
ccaacgcttgacgaagtatcaaagttcagcccgagtaatgaagatttggaccttagttca
cttgccttgagtgtaaaaaatgatcatgcagaatttcaagtcggtgatgtcgttgaagta
tttgtcggtgaacaagctggtgttggtggtgttgtcgaaactgttcatggcactgttgtt
accattatttcgaatgatgggttaagattggatgtcccttctcgcggcataagaaaacgt
ttccgtcatggtgattacgtgaaagttattgcaggaaaatacaaagatgataccggtatg
gttgtccgcatctcaaaagatgaggttactttcttgagcgatacgatgatgacagaatta
actgtattttctcgtgatcttggtgaagctggcagtgctcaggctatcaattctgcctat
gatctacatgatcttgttcagcttgatgtgaatacggtcggttgtgttttctcagttgaa
agagatacctatcgtgtagtagatcagcatggcggtgtaaggactgctaaagcatcacag
attacaatgcgacattcaaatcggcgtggtgtcgccactgacaggaatggtactgaaatt
cgtgttggtgataaggtcaaagaagttggaggtgaaaacaaagatggaactatactacat
atatatcgtgcatttgttttccttcataatagagagcttatggaaaataatggtgttttt
gttgccagaagccgcaatgttgctacagtggcagcaaaaggtgctcgtatttcaacagac
ttgactaagatgaaccctgcattaaatagcggtccttccttacctccggtcgcaaacatc
aaacgtaccatcggtcgtgataaagctattggtgccacagtacgtatacgtaaaggaccc
atgaagggattgctgggtgtgattaaggatactacggatgccaatgctcgtgttgagtta
catacgggaaataaaattgttccagttcccaaagaaaatttgttgtacaccagtaaaact
ggagacttgataacttatactgaatttattgaacgcagtcgcggtattcgtcccggcagt
atcggtaacgtggacggtccaagcgttccaagctgggcacagggtgcgcgtacaccagcg
tatgcgaacggtgctcagagtcaaggttggcagtctggtgggaaaacacctgcatggaac
tccggggccaaaacaccggcatggaatgctggagggaaaacaccggcatggagctctggc
aacaagactcccgcatggaatgctggcagtaagactcctgcttggaactctggtgctaag
actcctgcttggaacgctggtgctaagactcctgcttggaacgctggtgcaaaaacgcca
gcctggaatgccggaggtaaaaccccctcttggaatgcttctggtgctaccaacgttgct
ggacaagctccagtttatggtggcttctccgaaacaacctgggatactgatgataacaat
ggttcatgggcggcacctactcctgggggttgggctgcacccacgcctggtggatggaat
gaagatgaaggaaattctcctaactatgtgcctccgtcaccataa
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