Schizosaccharomyces osmophilus (fission yeast): SOMG_01836
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Entry
SOMG_01836 CDS
T09274
Symbol
rrp40
Name
(RefSeq) exosome subunit Rrp40
KO
K03681
exosome complex component RRP40
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_01836 (rrp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_01836 (rrp40)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
SOMG_01836 (rrp40)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP40_S1
KH_6
Rrp40_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
80875318
NCBI-ProteinID:
XP_056036818
UniProt:
A0AAF0AW05
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All DBs
Position
1:complement(join(4029526..4030035,4030185..4030394))
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AA seq
239 aa
AA seq
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MSEVKESSPSYYFPGDDVKLSNVIEQGTVRLGPGLVHQKHDHEDKIKVSRPGILHQGVKN
TVLVDTRMKRYIPAMNDQVIGQITSRFAEGYRVDIGSAHSAQLNALAFENVTRKSKPNLT
VGSLVYARVSLADRDMEPELECLDAATGKASGFGELKEGYMITGLSLSHCRKLLSPQNAL
LQALGTYVPFEIAVGMNGRVWTHSETIPTTILISNCIKQSEFLNDDEQVQLVKSMVKNL
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagttaaagaatcaagtccttcttactactttccaggagacgatgtaaagttg
tctaatgtaatagagcaaggaactgttcgactaggtcctggcttagttcatcaaaaacac
gatcatgaagataaaatcaaggtctctcgacctggtattttgcatcagggagtcaaaaac
actgtattggtggatacaagaatgaaaagatatattcctgctatgaatgatcaggtcatt
gggcaaattacttctcgttttgctgagggttatcgggtggatattggatcagcacatagt
gctcaattgaacgcattggcctttgagaacgttactcgaaaaagcaaaccaaatttaact
gttggaagcttggtgtatgctcgcgtatctttggctgaccgcgatatggaaccagagctg
gaatgtttagatgcggccacaggaaaagctagcggttttggagaattaaaagaaggttat
atgattactggattatccctatcacactgcagaaaacttttgtcccctcaaaatgccctt
ttgcaagctcttggcacctatgttccttttgaaattgccgttgggatgaacggacgtgtg
tggactcactcggaaacgattccgaccacgattttgattagcaattgcataaaacagtcg
gaatttttgaatgatgatgagcaggttcaattagtaaagtcaatggtaaaaaatctttaa
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