Schizosaccharomyces osmophilus (fission yeast): SOMG_01892
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Entry
SOMG_01892 CDS
T09274
Symbol
cdc48
Name
(RefSeq) AAA family ATPase involved in ubiquitin-mediated protein degradation Cdc48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
SOMG_01892 (cdc48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_01892 (cdc48)
03009 Ribosome biogenesis [BR:
som03009
]
SOMG_01892 (cdc48)
04131 Membrane trafficking [BR:
som04131
]
SOMG_01892 (cdc48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
som04147
]
SOMG_01892 (cdc48)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
SOMG_01892 (cdc48)
Ribosome biogenesis [BR:
som03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
SOMG_01892 (cdc48)
Membrane trafficking [BR:
som04131
]
SNARE
SNARE associated proteins
Others
SOMG_01892 (cdc48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
SOMG_01892 (cdc48)
Exosome [BR:
som04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SOMG_01892 (cdc48)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_33
AAA_16
AAA_5
TIP49
AAA_22
CDC48_2
AAA_14
Mg_chelatase
RNA_helicase
AAA_28
nSTAND3
Parvo_NS1
AAA_7
IstB_IS21
ATPase
AAA_18
AAA_17
NPHP3_N
ABC_tran
ResIII
DUF815
AAA_24
PhoH
TsaE
Vps4_C
ATP-synt_ab
KAP_NTPase
Molydop_binding
DUF5839
eIF-1a
Zot
GOLD_2
Motif
Other DBs
NCBI-GeneID:
80875374
NCBI-ProteinID:
XP_056034914
UniProt:
A0AAE9W882
LinkDB
All DBs
Position
1:join(4147552..4147607,4147667..4150040)
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AA seq
809 aa
AA seq
DB search
MNDKNPEVERLQGTKPSEDAQKAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSPNTM
ETLQLFRGDTVVVKGKRRKDTVLIVLTDDEMEDGAARLNRVVRNNLRIRLGDVVTVNPCP
DIKYAERISVLPLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQIEFKVV
DVAPDEFGIVSQDTVIHWEGEPINREDEESSLAEVGYDEIGGCRRQMAQIRELVELPLRH
PQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANETGAFFFLINGPEIMSKMAGESESNL
RKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEVERRVVSQLLTLMDGMKARSNIVVMAA
TNRPNSIDPALRRFGRFDREVDVGIPDPTGRLEVLRIHTKNMKLADDVDLEQIAAETHGY
VGSDLASLCSEAAMQQIREKMDLIDLDEDEIDAEVLNSLGVTMENFRFALGSGNPSALRE
TVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTL
LAKAIANECSANFISVKGPELLSMWFGESESNVRDIFDKARAAAPCVVFLDELDSIAKSR
GASAGDSGGGDRVVNQLLTEMDGVNSKKNVFVIGATNRPDQIDPALMRPGRLDQLIYVPL
PDEEARFGILTTQFRHTPMAEDVDLRAVAKATHGFSGADLEFVVQRTVKMAIKESIEEDI
KKENEAKEAGADDVVMEEDATASQVQRHHVEEAMKMARRSVSDAEVRRYEAYAHQLLTSR
GLTGFQFDSSNNNANGPSFGNDGADDLYA
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgaacgataagaacccagaagtggaacgtcttcagggcacgaaaccctcggaagatgct
caaaaagcagaagatactgcaactgcaatccttcgcaagaagagaaaacccaattcctta
gttgtggatgatgccaccaacgatgacaattcagttattacactctctcccaatactatg
gagactttgcagcttttcagaggtgatactgttgttgtcaaaggaaagagacggaaagac
actgttttgattgttctcaccgacgacgaaatggaggacggtgctgctcgccttaaccgt
gttgttcgtaacaatttgcgtattcgtctaggtgatgttgtaacagtcaacccttgtcct
gatatcaagtacgctgaacgcatttccgtattgcctttggccgacactgtcgaaggtctt
accggatcacttttcgatgtgtacttgaagccctactttgttgaagcctaccgtcctatt
cgaaagggcgacttgtttgtcgttcgtggcagcatgcgtcaaattgaattcaaggttgtt
gatgtagctccagatgagtttggtatcgtcagtcaagatactgttattcactgggaaggt
gagcccatcaatcgggaagatgaagagagcagtttggcagaggttggttatgatgaaatt
ggtggatgccgccgtcaaatggctcagattcgtgagcttgttgagctcccccttcgtcac
cctcagttattcaaaagtattggtattaagccacctcgtggtattctcatgtacggacct
ccaggtaccggtaaaaccttaatggctcgtgctgttgctaatgagaccggtgctttcttt
ttcttaatcaatggtcctgaaatcatgtctaaaatggctggtgaatctgaatctaattta
cgtaaggctttcgaagaagccgaaaagaattctcctgctattattttcattgatgaaatc
gattctattgctcccaagcgtgaaaaaaccaacggagaagtagaacgtcgtgttgtatct
caattgcttactcttatggatggtatgaaggcacgtagcaacattgttgttatggctgct
actaaccgtcccaactcaatcgatcctgctttgcgtcgtttcggtcgtttcgatcgtgaa
gtagatgttggtattcctgatcccactggccgtttagaagttctccgcatccataccaag
aacatgaagttggcagatgatgttgatcttgaacagattgcggctgagacacacggttac
gttggttcagatttggcatctctgtgttctgaagccgctatgcaacaaatccgtgaaaag
atggacttgattgacttagatgaggatgaaattgatgccgaggtgttgaattctcttggt
gtcactatggagaacttcagatttgcccttggctctggaaatccctctgcgttgcgtgag
actgttgtcgaagttccaaatgttcgctgggaagatatcggtggtttggaagaagtcaag
agagaattgcgggagactgtccaaatgccagttatgtatgccgagaagttcttacgcttt
ggagttaccccaagcaagggtgtacttttctttggacctcctggtaccggtaaaaccttg
ttggccaaggctattgccaacgaatgctctgcaaacttcatttcagtgaagggacccgag
cttcttagtatgtggtttggtgaatccgaatctaatgttcgtgatatttttgataaggcc
cgtgctgctgctccctgtgttgttttccttgatgagttagattctattgccaagtctcgt
ggtgctagtgctggtgactctggtggtggtgaccgagtggtaaaccagttgcttactgaa
atggatggtgttaatagcaagaagaacgtgtttgttattggtgccacaaacagacctgac
cagattgatcctgctcttatgcgtcctggtcgtttggatcaattaatctatgttcctctt
ccagacgaggaagctcgttttggtattttgacgactcaattccgtcatactcctatggcc
gaggatgtggacttgagggctgttgccaaggctactcatggattttctggtgcagatttg
gagtttgtcgtacaacgtacagtgaaaatggccatcaaggaaagcattgaagaagacatt
aagaaagagaatgaggccaaggaagctggagcagatgatgttgtcatggaagaagacgct
actgcttctcaagttcaaagacaccatgttgaagaagctatgaagatggcacgtcgttcc
gttagtgatgctgaagttcgtcgatatgaagcttatgctcatcaacttctcacgtctcgt
ggcttgacgggattccaatttgattcttcgaacaataatgctaatggacccagctttgga
aacgatggtgctgatgatttgtacgcatag
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