Schizosaccharomyces osmophilus (fission yeast): SOMG_01907
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Entry
SOMG_01907 CDS
T09274
Symbol
mtr4
Name
(RefSeq) TRAMP complex ATP-dependent RNA helicase subunit Mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_01907 (mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_01907 (mtr4)
03041 Spliceosome [BR:
som03041
]
SOMG_01907 (mtr4)
03009 Ribosome biogenesis [BR:
som03009
]
SOMG_01907 (mtr4)
03016 Transfer RNA biogenesis [BR:
som03016
]
SOMG_01907 (mtr4)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SOMG_01907 (mtr4)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SOMG_01907 (mtr4)
Spliceosome [BR:
som03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SOMG_01907 (mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
SOMG_01907 (mtr4)
Ribosome biogenesis [BR:
som03009
]
Eukaryotic type
Pre-60S particles
Helicases
SOMG_01907 (mtr4)
Transfer RNA biogenesis [BR:
som03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SOMG_01907 (mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Helicase_dom4_arc
AAA_22
AAA_16
nSTAND3
Motif
Other DBs
NCBI-GeneID:
80875389
NCBI-ProteinID:
XP_056035554
UniProt:
A0AAF0AT60
LinkDB
All DBs
Position
1:complement(4185641..4188964)
Genome browser
AA seq
1107 aa
AA seq
DB search
MFEGELDDAFDVFEGKVPKSLKKDVDSPKGENGKQSSSNDNQSVDAVKGSNKRQDSEAKQ
SDVKRKKIEESIAAPWTRSNEPVAGANKGEGVVNEIVDASEEIPVSSENGTEDGKPPADA
LVTDSFEQEASLKVAGDVGMAEAKSESDHVVELRHQVRHQVSLPPNYNYVPISQHKSPDP
PARTYPFTLDPFQAVSIASIERQESVLVSAHTSAGKTVVAEYAVAQSLRDKQRVIYTSPI
KALSNQKYRELLAEFGDVGLMTGDVTINPDATCLVMTTEILRSMLYRGSEVMREVAWVIF
DEIHYMRDKERGVVWEETIILLPDQAHFVFLSATIPNAMQFAEWITKIHRQPCHVVYTDF
RPTPLQHYLFPSGGDGIHLVVDEKSVFREENFQRAMTALVEKQGDDPAAVVSKKNAKKGK
TGKGGVKGPSDIYKIVKMIMLKNYNPVIVFSFSKRDCEALALQMSKLDMNDETERDLVTT
IFKNAINQLSEKDRDLPQIEHILPLLRRGIGIHHSGLLPILKEVIEILFQEGLIKVLFAT
ETFSIGLNMPAKTVVFTNVRKFDGKSFRWISGGEYIQMSGRAGRRGLDDRGVVILMIDEK
MEPPVAMTMLKGEADRLDSAFHLSYNMILNLLRVEGISPEFMLERCFFQFQNSMEVPKME
ENLENLQQQYDNTSIPDERALEDYHTIQLQLKKYRDDVRTVINHPNFCLSFLQSGRLVAI
NYKDEDFGWGAVVSVSKRPLPKGETKEYVPQESYVLDVIVKVPSDSERPRMKNGRLPEIH
APKGDDKGRFEVVPVPLSALNGIAHIRVFLPNDLKSQAQRDTVGKALSEVKRRFPDGISL
LDPVENMNVKDPAFLKLMKKVDVLEARLLSNPLHNFEDLKEKYDQYLGKLSMLDQIKELK
KQLSKAKAIMQLDELSARKRVLRRLGFTSSDDVIEMKGRVACEISTGDGLLLTELIFNGI
FNDLKPEQCAALLSCVVFQEKSEAENQRMKDELAGPLRILQEMARRIAKVSQESKFDVNE
EDYVNSFKPSVMEIVYAWAHGATFAQICKMTDVYEGSLIRMFRRLEELLRQMGEAAKVIG
NSGLQKKMEDTISCIHRDIVFSASLYL
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaggagagttagatgatgcttttgacgtttttgagggaaaagttccaaaaagc
ttaaagaaagacgtagacagccctaagggagaaaatggcaaacagtcatcttctaatgat
aatcagtctgttgatgctgtaaaaggaagcaataagcgacaggattctgaagcaaaacag
tcggatgttaagcgtaagaagattgaggaatctatagctgctccttggaccagatcgaac
gagcctgttgcaggtgctaataagggtgaaggagtagtaaacgagattgttgatgcctca
gaagagatccctgtttcttccgagaatgggacagaggatggcaagcctcctgctgatgca
ttggttaccgattcttttgagcaggaagcttctttgaaggttgctggtgatgttggcatg
gctgaagctaaatcggaatctgatcatgttgtcgagcttcgccatcaagtccgtcaccaa
gtgtcgttgcctccaaattacaactacgtacctatatctcaacacaaaagcccggatcca
ccagctcgaacatacccttttacccttgatcctttccaagcagtttccattgcttcgatt
gaacgtcaagagagtgttttggttagtgctcacacatctgccggtaaaactgttgttgct
gagtacgctgttgctcagtcgcttcgtgataagcaaagagtcatctacaccagtcccatc
aaagctctgagtaatcaaaaatacagagagctcttagcagaatttggcgatgttggtcta
atgaccggtgatgttactatcaatccagacgctacctgcttggtaatgaccaccgaaatt
cttcgttcaatgctttaccgtggctctgaggtaatgcgtgaagttgcttgggttattttt
gatgaaattcattatatgcgtgacaaggaacgtggtgttgtatgggaagaaactattata
ttattgcctgatcaggctcatttcgttttcctttctgcaactattcccaatgccatgcaa
ttcgcggaatggatcactaaaattcatcgtcaaccctgtcacgttgtttatacggatttt
cgaccaacacctttacagcactatttgtttcccagcggtggtgatggaatacatttagta
gttgatgaaaagagcgtttttcgtgaagaaaatttccaaagagcaatgactgctttggtt
gaaaaacagggtgatgacccagctgctgttgtctccaagaaaaatgctaaaaagggaaaa
actggcaaaggaggtgttaaaggtccttctgacatctacaaaattgtcaaaatgattatg
ctgaagaactataatccggtcattgttttcagttttagcaagcgtgattgtgaagcttta
gctttgcaaatgtccaagctagatatgaacgatgaaactgagcgtgatctcgttaccact
atttttaaaaatgctattaatcagttatccgaaaaggatcgtgatttacctcaaatcgag
catatcttgcctctgcttcgtcgcggtatcggcattcaccactctggtttgcttccaatt
ttgaaggaagttattgaaattttgtttcaggaaggtttaattaaggtgttgtttgctacc
gagacgttttccattggacttaacatgcctgcgaaaactgtcgttttcactaacgttaga
aagtttgatggaaagagcttccgttggatttcaggtggtgaatacattcaaatgagtggt
agagctggtcgtcgtggtttggatgaccgtggtgttgtaattttaatgattgacgaaaaa
atggaaccacctgtggctatgacaatgcttaaaggtgaagcggaccgtctagattctgct
ttccacctgagttacaacatgattttgaacttgctgcgtgttgaaggtatttctcctgag
tttatgctcgaacgttgctttttccaatttcagaacagtatggaagttcccaaaatggaa
gaaaacttggaaaatcttcaacaacaatatgacaatacgtccattcctgatgagcgagca
ttagaggattatcacacaattcagcttcaactgaaaaagtaccgagacgatgttagaacg
gtcattaatcatcctaacttttgcctttcatttttgcaaagcggccgacttgtagccata
aattacaaagatgaagattttggctggggtgctgttgtaagtgtatcaaagagacctctt
cccaagggtgaaaccaaggagtatgttcctcaagagtcttatgtactagacgtaatagtg
aaagttccttcggatagtgaacgcccaaggatgaagaatggtcgcttacctgagattcat
gcgcctaaaggcgacgacaaaggaagatttgaagtggttcccgtccccttatcagctttg
aatggaattgctcatattcgtgtatttttacccaatgacttgaaatctcaagctcagaga
gacacagtgggtaaagcgcttagtgaagtcaagcgtcgtttccctgatggaatcagtctg
ttagatcctgttgagaatatgaacgtcaaggatccggcctttttgaagttgatgaaaaaa
gtggatgttttggaggctagattgctgtcgaatcctcttcataactttgaagatttgaaa
gaaaaatatgatcaatatcttgggaagctttctatgcttgaccaaattaaagagcttaaa
aagcaactttcaaaagctaaagctattatgcagctggatgaattaagtgctcgcaaaagg
gttctccgccgcttaggattcacttcttctgacgacgttatagaaatgaaaggtcgtgtt
gcatgcgaaattagtactggagacggattgttacttacggaactcatttttaacggtatt
ttcaatgacttgaagccagagcaatgtgctgctcttctcagttgcgtagttttccaagag
aaaagtgaagctgaaaatcagcgcatgaaggatgagcttgctggtcctcttcgtatttta
caagaaatggctcgtcgaattgctaaagtttctcaggaaagcaagtttgatgttaatgag
gaggattatgttaacagtttcaagccatcagtaatggagattgtgtatgcttgggctcat
ggagctacctttgcacaaatctgtaagatgactgatgtctatgaaggttccttgattcgt
atgtttaggcgtctggaagaacttctccgacaaatgggtgaggccgctaaagtaattggt
aattcaggtttacaaaagaagatggaagacactatcagttgtatacatcgtgatattgtt
tttagtgcttctttgtacttgtaa
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