Schizosaccharomyces osmophilus (fission yeast): SOMG_01984
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Entry
SOMG_01984 CDS
T09274
Symbol
pabP
Name
(RefSeq) major poly(A) binding protein Pabp/Pab1
KO
K13126
polyadenylate-binding protein
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03015
mRNA surveillance pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SOMG_01984 (pabP)
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_01984 (pabP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_01984 (pabP)
03041 Spliceosome [BR:
som03041
]
SOMG_01984 (pabP)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
SOMG_01984 (pabP)
mRNA cycle factors
Stress granule specific factors
SOMG_01984 (pabP)
Spliceosome [BR:
som03041
]
Complex C
Other components
Complex C specific factors
SOMG_01984 (pabP)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_7
RRM_3
RRM_occluded
YflT
RBD_DGKtheta
FAM192A_Fyv6_N
Gemin7
Motif
Other DBs
NCBI-GeneID:
80875466
NCBI-ProteinID:
XP_056037075
UniProt:
A0AAE9WAM5
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All DBs
Position
1:4371743..4373677
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AA seq
644 aa
AA seq
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MALTDLNKQADVAAESEVKPTTSVEATNQQESGAGEAETQKPTEEAASGDVSGAGTPGTT
TSSLANPSASAPSSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAY
VNFHNMEDGSKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALH
DTFSAFGKILSCKVAVDELSNSKGYGFVHFDTVDSANAAIEHVNGMLLNDKKVYVGHHVS
RRERQSKFEQMKANFTNVYVKNLDTEITEQEFSDLFTPFGEITSLSLVKDQADKPRGFGF
VNFANHEDAERAVDELNDTEINGKKLYVGRAQKKHEREDELRRRYEQIKMEKMNKYQGVN
LFVKNLQDEVDDERLKNEFSAFGTITSAKVMTDEQGKSKGFGFVCYTTPEEANKAVTEMN
QRMLAGKPLYVALAQRKEVRRTQLEAQIQARNQFRLQQQVAAAAGIPAVQYGGGPLMYGP
GGYPIPAAVNGRGMPMVPGHNGPMPMYPGMPPQFPPGVAPTYPGMSPRGPAPVPAQGRPM
MMPGGVPQPEAAESAVPDMPERFTAADLAAVPEENRKQVLGELLYPKIFMREEKLAGKIT
GMLLEMQDSELLELLEEDAALSERIDEALNVLHEFADEEPAGEQ
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggctcttacggatctgaataagcaagctgacgtcgccgctgagagcgaagttaagccc
actacctctgttgaggctaccaaccaacaggaatctggtgctggtgaagctgaaacccaa
aagcccaccgaggaagctgcttccggtgatgtttctggtgctggtacccctggtactacc
accagctctttagctaacccctctgctagcgctccctctagtgcttccttatatgttggt
gaactcgaccccagtgtgactgaagctatgctttttgagctctttaacagtattggacct
gtggcaagcattcgtgtttgccgtgacgccgttactcgtcgctctttgggctatgcttat
gtcaacttccacaacatggaagacggttccaaggctttggacgagcttaactacactttg
atcaagggccgtccttgccgtatcatgtggtctcaacgtgatccttctttgcgtaagatg
ggtactggcaacgttttcattaagaacttggatccagctatcgataacaaggctttgcac
gacactttctctgctttcggcaagattttgtcctgtaaggttgctgtcgatgagctaagc
aactctaagggatacggatttgttcatttcgacactgtcgactctgccaacgcagccatt
gagcacgttaatggcatgcttttgaacgacaaaaaggtttacgttggtcaccacgttagc
cgtcgtgagcgtcaatctaagtttgagcaaatgaaggctaacttcaccaacgtttacgtc
aaaaaccttgacactgaaatcaccgaacaagaattcagtgatctctttactccctttggt
gaaatcacctctctttctttggtcaaggaccaagctgacaagccccgtggttttggtttt
gtcaacttcgctaaccatgaggatgctgaaagggccgtcgatgagctcaacgatacagaa
atcaacggtaagaagctctatgttggccgcgctcaaaagaagcacgaacgtgaagatgag
ctccgcagacgttatgagcaaattaagatggaaaagatgaacaaataccaaggcgtcaac
cttttcgtcaagaacttgcaggatgaagttgatgatgagcgtcttaagaacgaattctct
gctttcggtaccatcacttccgccaaggttatgactgatgaacaaggcaagtctaagggc
ttcggtttcgtttgctacactacccctgaggaggctaacaaggctgttactgaaatgaac
cagcgcatgctcgctggcaagcctttgtatgttgcccttgctcaacgtaaggaggttcgt
cgtactcaattggaagcccaaattcaagcccgcaaccaattccgtttacaacaacaagtt
gcagctgccgctggtatccctgctgttcaatacggtggtggccctctcatgtatggcccc
ggtggttaccccatccctgctgccgttaacggacgtggtatgcccatggttcctggtcac
aatggccctatgcctatgtaccccggaatgcctcctcaatttccccccggtgtcgctccc
acttaccctggtatgagccctcgtggacccgctcccgtccccgctcaaggtcgtcctatg
atgatgcccggtggtgttcctcagcctgaggctgccgaatctgctgttcctgatatgcct
gaaagattcactgctgccgatttggctgctgttcctgaggagaacagaaagcaagttctt
ggtgaattgctctaccccaagatcttcatgcgtgaagagaaacttgctggtaagattact
ggtatgcttttggaaatgcaagattctgagttattggaacttcttgaggaagatgctgct
cttagcgagcgtatcgatgaggccctcaatgtcttgcacgaatttgccgatgaagagcct
gccggtgagcaataa
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