Schizosaccharomyces osmophilus (fission yeast): SOMG_01998
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Entry
SOMG_01998 CDS
T09274
Symbol
vam6
Name
(RefSeq) HOPS complex Rab GEF subunit Vam6
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som04138
Autophagy - yeast
som04142
Lysosome biogenesis
som04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
som00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
SOMG_01998 (vam6)
04138 Autophagy - yeast
SOMG_01998 (vam6)
04148 Efferocytosis
SOMG_01998 (vam6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
som04131
]
SOMG_01998 (vam6)
Membrane trafficking [BR:
som04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
SOMG_01998 (vam6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
zf-Vps39_C
CNH
VPS18_solenoid_2nd
Clathrin
Motif
Other DBs
NCBI-GeneID:
80875480
NCBI-ProteinID:
XP_056036887
UniProt:
A0AAE9WAF6
LinkDB
All DBs
Position
1:complement(join(4403021..4403093,4403145..4405527,4405584..4405688,4405730..4405807,4405851..4405923))
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AA seq
903 aa
AA seq
DB search
MHRSFSLFRVLELSKSKIECIFELGEHIYVSNSNGDLDRYKIYRGADNLNDDFVMEHVEF
YSAFTKKPITKVIRDTSKDIFYALSDSSIHVYKISTFEKLQSIGSYCQNMCLYGNNQVIL
AERKYLNIYKWQAPNRLVHDKSISLNDRARTLAWMSSNMILVSFSNEFVAVNVETSQSSS
LNLPWQPSSSLGLGMSYIGMSMKLNRLHITRISDEEVLLSRDTQGYLVNLKSLHVSRQPL
VWPTSPQAVIYNSPYLVSLHSQYIYVWNKDTHALIQQIGISNISSTFSCEENTFFTSNSY
VWILVPEDFGSQIESLLQSNQLDEAISVLDQIDDVKFPKRNYYLRMTKREKASRSFSSGD
YETAMKLFTEICESPSFVLRLFPKLVENDYSDALSILSSGPPPSDLPTVGSPQTSIRPTS
KIDSQGQDDSKSVVFNNKRLRSLSAYLTDSRRKANLFLSWDEETYHSYQKDLFRNDDGSI
ISKKDLENIAVEVDTTLFLTYMVSTPALVGSLLRLPNHCETSVVEANLTSAGMFRELIDY
YFGKRDHDDALKLLTKLNEEGTSLSSSKAQEETSKYDDILSYLQKLNAEDKKYVFEYART
PLINDPKASIRLFLNDTSGSSAISHGAVLNYLETVSSEVSIFYLENLIASGKTDLETFST
RLGQLYLRRIHELERESSDKKFSASFESVLKGFMQHLNESRRYDANAILNDIDPNDHHLF
EASVILYRHLSRHRDALDVYLDKMKDWKGANGYCDSIYMDTGETEPYYMYLSDLANQQPE
GIISFITKYSSRLKMKRIFPLLPKDTSMKTYHTFLSSQFRQLYEEKNKKELQSKLYQTRI
NDLNADLSHIRSEKVVITREKTCLHCHKRLGKSVISIFPDGSVVHYGCAKKYLVHRNLPY
EAY
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgatctttctctctattccgcgttttggagctttcaaaatctaaaattgaatgt
atttttgagttaggcgaacatatttatgtttcaaacagcaatggtgatctggataggtac
aagatctatcgtggagctgacaacttgaatgatgatttcgttatggagcacgtagagttt
tattctgcattcacgaaaaaaccaatcacaaaagtgattcgtgatacctcaaaagacatt
ttctacgctctatccgattcctccatacatgtgtataaaatatcaacgttcgagaagctc
cagagtattggtagctattgccaaaacatgtgtttatacggaaataatcaagttattctg
gcagaaagaaagtatctaaatatttataaatggcaagcacccaatcgacttgttcacgac
aaatcaatctcccttaatgatcgagcccgtactttagcatggatgtcctcaaatatgata
cttgtctctttttcaaacgagtttgttgcagtgaacgttgaaacatctcagtcatcctct
ttgaatctgccttggcagccgtcgtcttctttaggactcggcatgagttacatagggatg
tctatgaagttgaatcgtttacatattacaagaatttccgatgaagaagttctactgtca
agagacacgcaaggctacctggttaatcttaaatctttacatgtttcaagacagccatta
gtttggcctacaagcccacaagctgttatctacaattcaccttatttagtttctctccat
tcacagtacatttacgtttggaataaggatactcatgctcttatccaacaaattggtatt
agtaacatctcctctaccttttcttgcgaagaaaatacattttttacgtcaaactcttat
gtttggattcttgttcctgaagatttcggttctcagattgaatccttgttgcaatcgaat
caacttgatgaagcgataagcgtcttggaccagattgacgatgtgaaatttcccaaacgg
aattattatcttcgtatgacgaaaagagaaaaagcttctcgttccttttcctccggtgac
tatgagaccgccatgaaattatttacggaaatatgtgaatctccctcttttgttttgagg
cttttcccaaaactcgtggaaaacgattattctgatgcacttagtatcctgtcttctggc
cctcctccttcagacctgccaacggttggatctcctcaaacaagtatacgcccaacgtcg
aagatcgattctcaaggacaggatgatagcaaatctgtggttttcaacaacaaacggcta
cgaagtttgagtgcatatttgactgattcaagaaggaaagcaaatctcttcttgagttgg
gatgaggaaacttaccattcataccaaaaagatctttttcgtaacgacgatggaagtata
atatctaaaaaggatttggagaatattgctgtcgaagttgatactacactatttttaaca
tatatggtgtctactccggcccttgtaggatctttactgcgtttacctaatcactgtgaa
acttcagtcgtagaagcaaacttaacgtcggctggaatgtttcgtgaattgattgattat
tattttggtaaaagagatcatgacgatgctctgaaattgttgacaaaacttaacgaagag
ggaacctctttatcctcctctaaggctcaagaggaaacctctaaatacgacgatatcctt
agctatcttcaaaaacttaatgctgaggataagaaatatgtctttgaatatgccagaact
cctcttattaatgatcctaaggcctcgatacggttatttcttaatgatacaagcgggagt
agtgctatatctcatggtgcagttttaaattaccttgagaccgtatcttctgaggtttcc
atcttttatttagagaatctaattgcttctgggaaaacagatctcgagaccttttcgact
cgccttggccaactgtacttgcgtcgaattcatgaattagagagggagagcagcgataaa
aaattctcagctagttttgaaagtgtgttaaaaggattcatgcagcacttgaatgaatca
agaagatatgatgcgaatgcaatacttaacgacatcgatcccaatgaccatcatttgttt
gaagcatcggtaatcctttatcgacatttatcgaggcatagagacgcgctggacgtatat
ttagataaaatgaaggactggaaaggggcgaatggttattgtgattctatttatatggac
actggcgagactgagccttattatatgtacctttcagatctcgcaaatcaacaaccagaa
ggaataatatcatttattacgaagtatagctctcgcttgaaaatgaaaaggatttttcct
ctgttacccaaagataccagcatgaaaacttatcatacatttttgtcttctcaatttcga
caactctacgaagaaaaaaataagaaagaattacaatcaaagttgtaccaaacaaggatt
aatgatttaaatgcagacctctcccacatccgttcagaaaaagttgttataacaagagaa
aagacttgtttacattgccacaagcgattaggaaagagcgttatttctatatttcccgat
ggttctgtcgtacactacggctgtgctaaaaaatatttggtccataggaatcttccctat
gaagcctattaa
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