Schizosaccharomyces osmophilus (fission yeast): SOMG_02015
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Entry
SOMG_02015 CDS
T09274
Symbol
vps41
Name
(RefSeq) HOPS complex subunit Vps41
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som04138
Autophagy - yeast
som04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
som00001
]
09140 Cellular Processes
09141 Transport and catabolism
04138 Autophagy - yeast
SOMG_02015 (vps41)
04148 Efferocytosis
SOMG_02015 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
som04131
]
SOMG_02015 (vps41)
Membrane trafficking [BR:
som04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
SOMG_02015 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
Clathrin
WD40_WDHD1_1st
Beta-prop_HPS5
WDR55
WD40_CDC20-Fz
Beta-prop_WDR35_2nd
Beta-prop_WDR90_POC16_2nd
WD40
WD40_like
RAB3GAP2_N
Beta-prop_IFT122_2nd
Beta-prop_EML_2
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
80875497
NCBI-ProteinID:
XP_056035443
LinkDB
All DBs
Position
1:complement(join(4433046..4433281,4433334..4435262,4435325..4435483,4435536..4435677,4435723..4435884))
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AA seq
875 aa
AA seq
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MSVSETSSESEVDILTSSDEDEEPKLNYERTTDKFQGCFLNDSISACVISKEHFLFGSHN
GAVYIYTREGVLLRKMILHVATVTSLSVDLESENLASCSLDGKLIVYNISSKETSVYDFK
RPLLSVAIDPYYSNRSSRQIICGGRAGKVILSEKGWLGSRDIVLQVDCGTVYKIDWYKSY
VSWATDTGVYIYSNEYGKIFGNVDYPKKLPNQEVFPYQLYWQSESRLIIGWADQISIVSI
QRSSQPNELPKVSVQAVLEIDSIVSGIMMFDFNILVLAYIAEVEDFTSSSRPRRVDAVRP
ELRLIDSSFQELAGDVIGLTNYSRLQPSDYHLVSDPAKKDHSYVVFPNDIICARERNEID
HVTYLVSREDYAEAIAAVKTMKDVPPELRVSELGKKYVAHLIDNKQYRKAASVIPTLYVN
NPGGWEQWVFVFADHNRLEDVAEYLPLGDDHLSPIIYEMTLANYMALNEKKFNEKLHSWP
TNLYSVSTIRKATEKKYEQVPESFLLADSLAFLYVNDNMPVEAFWLYLKLNQKECIDLVF
EHNLYDEARQSVLQLLLTSADGHPENVNPKVINMLVQHVHSFPPKEVIRQIESVTRFLYA
YFCSYEVMFPNSLMEYGDLKVNVFAEFDRPRLFEFLMNTQCYSLGHAYNVCVKYHYLDEL
VYVLGRMGNNKDALMLIINELSDIGRAIRYVKEQGDKDLWEDLISYSLDKPDFICTLLEN
IGSDENAHNLITRIPKGMKLPHAKESLSKLLSDHQLQVYLHLGCHNLFEDEASQKVKKLH
SDQNNGFEVDKHIVSQEDNVNELVNFDYSNLSEEPLPFVFDTKTNEFRSISSLGYDIHTL
ASDNEFRDAASHARNRLKPDLAMSSKLSILMALKK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgtcagttagtgaaaccagttccgagtccgaagtagacatattaacttcttcggatgaa
gatgaagagcccaaattgaattatgaaaggactacagacaagttccaaggctgctttctg
aacgattctatctcggcctgtgtaatttcaaaggaacacttcttatttggatcacataat
ggtgccgtgtacatttacactcgagaaggtgttttgcttcgaaaaatgattctgcatgtt
gctactgttaccagcctttctgtggatctagaaagtgagaacctagcatcatgttcatta
gatgggaaactaattgtctacaacattagttccaaggaaacgtcagtttatgatttcaaa
cggcctctactatctgtagcaattgatccctactatagcaacagatcttctcgtcaaatt
atatgcggagggcgagcgggcaaagttatactatctgaaaaaggatggctgggatctaga
gacattgtccttcaggttgattgtggaactgtatacaaaatagattggtacaaatcttat
gtttcttgggctactgatacaggagtctatatttatagtaacgaatatggaaaaattttt
ggaaatgttgactatccaaagaagctacctaaccaagaagtatttccttaccaactctat
tggcaatccgagtccaggctcataattggttgggcagaccaaatatctatagtttccatt
cagcgctccagtcagcctaatgaattgccaaaagtttcggttcaggctgttttggaaatc
gactcgattgtcagtggtatcatgatgtttgacttcaacatccttgttcttgcttacatc
gctgaggtggaggattttacttcttcttccagaccgagaagggtagacgcagtacgacca
gagcttcgactaatagactcttcatttcaagaactcgctggagatgtcatcgggctgacc
aactattctcgtttacagccttccgactatcatttggtttcagatccagcaaagaaagat
cattcgtacgtggtttttcctaacgatattatatgcgctcgtgagagaaatgagattgat
cacgtcacatatcttgtttcccgtgaggattatgctgaggcaattgctgcagtaaaaaca
atgaaggacgtgcctccagaattacgggtctccgaacttggaaaaaaatacgtagcccat
ttgattgacaataaacagtatcgaaaagcagcttcagttattcctactttatatgtaaat
aaccctggtggttgggaacaatgggtttttgtttttgctgatcataatcgtttagaagac
gttgctgagtatcttccgcttggagacgaccatttgagtcctattatatacgaaatgact
ttggcaaattacatggctttgaacgaaaaaaaatttaatgagaagctgcatagctggccg
acaaacttatattcggtgtcaacaattcgtaaagctacagaaaaaaagtatgagcaagtc
ccagaaagctttctgctagctgatagcttggcctttctttacgtcaatgacaatatgcct
gttgaggcattctggttatacctgaagttaaaccagaaagagtgcattgatcttgtcttt
gagcacaacctgtacgatgaagcaagacaatcggttttacaattattacttacttcagct
gacgggcatcctgagaatgttaacccaaaagttataaatatgctcgttcaacacgttcat
tcttttccacccaaagaggttataagacagattgagtcggttacaaggtttttgtatgct
tatttttgctcttatgaagttatgtttccaaattccctcatggaatacggtgacttaaaa
gtgaacgtttttgcagaattcgaccgaccgaggctatttgagtttttaatgaacacacag
tgctattctcttggtcatgcatataacgtttgtgtaaaatatcattaccttgatgaactt
gtctatgttcttggtcgtatgggaaacaacaaagatgcattaatgcttataatcaatgaa
ttgtctgatattggcagagctattcgttacgtgaaagaacaaggagataaggatttatgg
gaagatttaatttcttattctctggataaacccgactttatttgtacacttttggaaaat
ataggttctgatgaaaatgcacataatttaataactagaatcccaaaggggatgaaacta
ccacatgcgaaagaatcgctttctaagctcctatccgatcatcaattgcaagtttatctt
cacctgggttgtcataatttatttgaagatgaagcatctcaaaaagtgaaaaagctacat
tccgatcagaacaacgggtttgaggtcgacaaacatattgtttcccaagaagataatgtg
aatgagttggtaaactttgattactcaaacttatccgaagagccacttccttttgtattt
gacacaaaaaccaatgagtttaggagtatcagttcattaggatatgatattcacacgttg
gcttccgacaatgagtttagggatgctgcatctcatgcccgaaatcgacttaagcctgat
ttagctatgagcagcaaactaagcatacttatggctttaaaaaagtaa
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