Schizosaccharomyces osmophilus (fission yeast): SOMG_02094
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Entry
SOMG_02094 CDS
T09274
Symbol
rna4
Name
(RefSeq) U4/U6 X U5 tri-snRNP complex WD repeat subunit Rna4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SOMG_02094 (rna4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
som03041
]
SOMG_02094 (rna4)
Spliceosome [BR:
som03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
SOMG_02094 (rna4)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_WDR19_1st
PRP4
Beta-prop_DCAF4
Beta-prop_IFT122_1st
eIF2A
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
WD40_RFWD3
Beta-prop_RIG_1st
Beta-prop_IFT140_1st
Beta-prop_HPS5
MIOS_WD40
DUF2066
Motif
Other DBs
NCBI-GeneID:
80875576
NCBI-ProteinID:
XP_056036899
UniProt:
A0AAE9WAE5
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Position
1:join(4613124..4613163,4613218..4614581)
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AA seq
467 aa
AA seq
DB search
MSTNSGGIHLQDLETKQGPEGITRFSKEQAAYYAEKEREERIRALKVPYEDARVRELLRG
FGEPVTYFAEDAGSRRERLLNWMLERSYEGQEDILMATVQGDEEDEDEDHETYSEGSQEL
LEARRKIALYSLEKAKLRLEKERKEFEVPVPEKILSARSAADHFRKVDAMGSQVGGERPM
SIIRFCQDGNKFATGSWSGQVKVWDTKDLSQVRLYRGHTDKVSGLDWHPGCTAWDETSEN
VCLATGAADNSVCLWNGKQSTPISRLDGHLARVLRVAFHPSGNYLASGSFDTTWRLWDVA
TETELLMQEGHAEGIFSVAWQPDGSLLSSGGMDAIGRVWDVRSGKSVMVLDDHIRHIVSM
DWAPNGYQLATASADDTVKVWDLRKVSLSQSIPAHSSLVSDVRYVQSENAVLLLSSGYDG
CVKIWNPTTGALVKNLVGHEEKVMSVDGHGDRLLSSGFDRTIKLWHP
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaacagtggaggcatacatttgcaggatttggagacgaagcagggacccgaa
ggaattacacgattctcgaaagagcaagccgcgtattatgctgaaaaggagcgggaagag
cgtattcgagcattaaaagttccctatgaggatgcacgcgtgcgcgagcttttacgtgga
ttcggagaaccggtaacgtactttgcagaagatgcaggatcgcgacgagaacgactactg
aattggatgcttgaacgttcttacgagggccaggaagatattcttatggctaccgttcaa
ggagatgaggaagatgaagatgaggaccacgaaacgtattcggaaggcagccaagaattg
ttggaggcacggcgaaaaattgctctatactctttggagaaggctaaattgcgtttggaa
aaagagcgaaaagaatttgaagtccctgttccagaaaagatcctctccgctcgttccgct
gctgatcattttcgcaaagtagatgccatgggttcgcaggtgggtggagaacgacccatg
tctatcattcgtttctgtcaagatggtaataaatttgctactggcagttggagtgggcag
gtaaaggtttgggacaccaaggacctctctcaagtacggttgtatcgaggccatacggac
aaggtctcggggttagactggcatcctggttgtacagcatgggatgaaacatcagaaaat
gtttgtttggctacaggagcagcggacaattcggtttgtttatggaatggaaaacaatct
acgccaatttcacggttagatgggcatttggctcgtgtacttcgagtcgcatttcatcca
agtggtaattatttggcttctggctcttttgatacaacatggcgactatgggatgttgca
acagagactgaattactcatgcaggaggggcatgcggaaggcattttcagcgttgcctgg
cagcccgatggatcccttcttagttcaggtggaatggacgccataggacgggtatgggat
gttcgatctggaaagtccgttatggttttggatgaccacattcgtcacattgtttctatg
gattgggcaccgaatggataccaactggctacggcgtcagcagatgatactgtaaaagta
tgggacctccgtaaagtttcgctttctcaaagcattccggcgcattcttctcttgtatct
gatgttcgttatgtgcaatcggaaaatgcagtgcttttgctgtctagtggatatgatgga
tgtgtcaaaatttggaatccaaccacaggagctctggtaaagaatttagtcggccacgaa
gaaaaggtgatgagcgtggacggtcatggggaccgattgttatcgtctggttttgatcga
accattaaactttggcatccttga
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