Schizosaccharomyces osmophilus (fission yeast): SOMG_02126
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Entry
SOMG_02126 CDS
T09274
Symbol
edc3
Name
(RefSeq) enhancer of mRNA decapping Edc3
KO
K12615
enhancer of mRNA-decapping protein 3
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_02126 (edc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_02126 (edc3)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SOMG_02126 (edc3)
mRNA degradation factors
5'-3' decay
Decapping complex
SOMG_02126 (edc3)
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Gene cluster
GFIT
Motif
Pfam:
YjeF_N
FDF
Baculo_RING
Motif
Other DBs
NCBI-GeneID:
80875607
NCBI-ProteinID:
XP_056035777
UniProt:
A0AAE9W888
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Position
1:complement(join(4673449..4674489,4674611..4674991))
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AA seq
473 aa
AA seq
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MSVADFYGSKVEVYLNNEDVAQGVIANFDAANAALQLRLSDNTTKSIVTSDIKNLKLVPS
VPGSPSPSSKKNNSKPASNTNLGNTPSKSKTKNDSSKGQWAMDCDGEFDFAANLEKFDKK
QIFAEFREKDKKDPTKLLVAHNKSHHPTNYHPNENVLDSNEKEISSDSKNPSPSFTKKFR
NNIDASLASLMINESSSKGSNSKVGSNFETSNKKDRHGQLAPTVIRTVSGEKLSTVQPDI
LAQAVALAIAKTSTDIVIENAAQIISQFIYSVLGGHKRFTASNHNSQPLVCIVVGQHDHA
SAAVAAGRRLCAIGVNVVLRLLTPYNVDNKQLLMFLAAGGHMPNENFAEFVDKFSSPIEL
IVDTVSGFHSANDKKTTSLINWINKQNALVLSIDIPSGYACEQSDAVVQPKWTLALGAIN
TTLAKAAFVDQSAGVSVFVGNLGTGVHTWNELGVADSQVNGQYLTQVTCEDSE
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttgctgatttttatggttccaaagtagaggtatacctcaataatgaagatgtt
gcacaaggggttattgcaaactttgatgcagcaaatgcggcgcttcaattaagactctcg
gataatactacaaaaagcatagttacgtcggacataaaaaacctaaaacttgtaccaagt
gtccctggttcaccctcaccatcgtcaaaaaagaataactcaaagccggcttccaacacc
aatttaggaaacacacctagcaaatcaaagacaaagaatgattcttctaaaggtcaatgg
gctatggattgtgatggcgagtttgacttcgcagcaaacttggagaaatttgacaaaaaa
cagatatttgcagaatttcgggaaaaagataagaaagaccctacaaaattactcgtggcg
cacaacaaaagccaccatcctacaaactatcatcccaacgagaatgttttggattctaac
gaaaaagagatttcctcagactcaaaaaacccaagcccttcctttaccaagaaatttaga
aataacatcgatgcttccttggcttccttgatgattaatgaatcgtcttcgaaaggatca
aactccaaagttggttctaattttgaaacttcaaacaaaaaggaccgtcatggtcagtta
gctccgacagttatacgaacagtgtctggcgaaaaattaagcacagttcaacccgatata
ctcgcacaggctgtagcattagctattgcgaaaacgagcacagatatcgtcattgaaaat
gctgctcagattatttcccaatttatatactctgtcttgggtggacataaacgattcacg
gcttctaaccataactcccagcctttagtttgtatcgtcgtgggtcagcatgaccatgca
tccgcggctgttgcagctggaagaagactctgtgctatcggtgtaaacgtggttcttcgt
ttattgacaccttacaatgttgataacaagcaattactcatgtttttagccgctggagga
catatgccaaatgaaaattttgctgaatttgttgataagttttcttctccgattgagcta
attgtcgatactgtcagcggtttccactctgctaatgacaaaaaaacaacttctttgatc
aactggataaacaaacaaaatgccctagtgctatctatcgatataccttctggttacgct
tgcgagcaatcagatgccgttgttcagccaaagtggactttagctttaggggctattaac
actacattagcaaaagcagcatttgttgatcagagtgctggtgtttccgtgtttgttggg
aaccttggaactggtgtacatacttggaatgaattgggggttgccgattctcaagtcaat
ggtcagtatcttacacaagtaacctgcgaggattctgagtga
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