Schizosaccharomyces osmophilus (fission yeast): SOMG_02199
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Entry
SOMG_02199 CDS
T09274
Symbol
prp16
Name
(RefSeq) ATP-dependent RNA helicase Prp16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SOMG_02199 (prp16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
som03041
]
SOMG_02199 (prp16)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SOMG_02199 (prp16)
Spliceosome [BR:
som03041
]
Complex C
Other components
Step II factors
SOMG_02199 (prp16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
SRP54
nSTAND3
AAA_30
Flavi_DEAD
ABC_tran
T2SSE
ATPase
SLFN-g3_helicase
AAA_19
AAA_16
Motif
Other DBs
NCBI-GeneID:
80875680
NCBI-ProteinID:
XP_056034932
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All DBs
Position
1:4839920..4843501
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AA seq
1193 aa
AA seq
DB search
MSSNSYNDSLFSELIRKIQEYIPSKDASESLAKRVLPIAKGQSSEEGFSKALRTFGRFSD
QDTIVIYDLCKILIRTNDAMGPPADTLPYSDGQTKAGLVVPVKRTHNHEPGVNFSLLGLD
TLASEKRHEQAERSQGLREGSLPSHVGTVGNHDRVEFKKPKIPSRSDRPLRRRWNDDDHY
ENEKEDGDDRVKQYHQRSYSTTSGSQGDARDERSGSRYTSRDDDYHNRDDSHYAFKTNHD
DFREDSVGPRKRFPSKKQLSSRKKDGTSFVSHNTWDPRDVEYPEEDNESIEDRRRWEEEQ
AHLDREWYMNSESQNLLGDETHNPFADFETEEDKQREVEFIESQKRHLSVQATERMKENS
IWEKNRMITSGIAATPGLESDFSASEERRIHLLVHELRPHFLDGVNFTLRQQEITSVRDP
QSDLAINARRGSGVVRERREFRERQKAATAATTLAGTSLGNVMGVKETSEEDVHKKQSRT
SSTVAGKSGPKKEAIDNSARTKTYKEQREMLPAFAVREQLLSVIRDNQVLIVVGETGSGK
TTQLAQFLYEDGYDTNGMIGCTQPRRVAAMSVAKRVSEEMGVGLGSLVGYSIRFEDVTSP
DTVIKYMTDGVLLRESLVQNSLERYSVIIMDEAHERSLNTDILMGLLKKIISVRRDLKLI
VTSATMNSQRFSDFFGGAPQFAIPGRTYPVDVMFSKIPCTDYVEGAVRQALQIHLSQPAG
DILIFMTGQEDIEATCEIMADRLNQLDDAPRLSILPIYSQMPADLQAKIFESAESGVRKV
VVATNIAETSLTVHGISYVVDSGYCKLKMYNAKMGIDTLQITPISQANANQRSGRAGRTG
PGLAYRLYTELAYIREMFQTTLPEIQRTNLSHTVLLLKSLGIKNILHFEFMDPPPAKTLM
ASLYELWTLGALDNYGELTEIGRKMPLFPMDPSLSKLIIMAEDYHCTEEVITIVSMLSVP
SVFYRPKERAEESDAAREKFNVPESDHLTLLNVYLQWRRNGCSDSWCSKHFLHGKILKRA
SDVRQQLVEIMTTQKIPIKSAGSEWDIIRKVLCSSYFHQAATAKGIGEYTHLRSGMPCHL
HVTSSLYGLGYLPDYVIYHELVLTSKEYMNVVTSVDPYWLAEFGGVYYSLKERVRNETEN
YERVYSSKMKLEEQIEADREIDAQKKNSNDDVPKKPARKAVIRAKAPRRVRGF
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaattcttacaatgacagcttattttctgagttaattagaaaaattcaagag
tatattccaagtaaagatgctagtgaatcgctagcgaaacgggttttaccgattgccaaa
ggtcaatcgagtgaagaagggtttagcaaggcgttaaggacattcgggcgcttttccgat
caggatactatagttatttatgatctatgtaagattttaataagaacgaatgatgccatg
ggtccaccagcggatactttaccctacagcgatggtcaaaccaaggcgggtttggttgtc
cccgtaaaacgaacacataatcatgaaccgggagtcaatttctccttgttaggcttagat
actttagcaagcgagaaaagacacgaacaagctgagaggtctcaaggtttacgtgaagga
tcattaccttctcacgtaggaaccgttggaaatcatgaccgtgtggaattcaaaaagcca
aaaatcccttcacggtctgatcgtcctttgcgccgtcgatggaatgatgacgaccattac
gaaaacgaaaaggaagacggagacgacagagtaaagcaatatcatcaacgcagctattct
acaacaagcgggagtcaaggggatgctagagatgaaagatctggatctcgatacacttca
agggacgatgattatcataaccgcgacgactcccactacgcattcaaaacaaatcatgat
gattttagagaagattctgttggcccacggaaacgattcccaagcaaaaaacagctttct
agtagaaaaaaggatggaacttcctttgtatcacataatacttgggatccacgagacgtg
gaatatcctgaagaagacaacgaaagcatagaggaccggcgccgttgggaagaggagcaa
gcacatttagatcgtgaatggtacatgaattctgagtctcaaaatctgctaggggatgaa
actcataacccattcgctgattttgagacagaggaagacaagcaaagagaagttgagttc
attgagtctcaaaaacggcacctttctgtccaggccaccgaaagaatgaaggaaaactcg
atatgggagaaaaaccgaatgattacttctggcatagctgctacccctggactagagtcg
gatttttcagcctctgaagaaaggcgtattcacctcttggtacacgaacttcgacctcat
tttcttgacggtgttaattttacattaaggcagcaagaaataacttctgtgcgtgatcct
caaagtgaccttgctataaatgctcgccgggggtctggcgttgttcgtgaacgacgagag
tttagagaacgtcagaaggctgctacagcagctacgacacttgctggtacttctttggga
aatgttatgggtgtcaaagaaacttcagaagaggatgttcataaaaaacagagtcgcaca
tcctctacggttgccggtaaatcaggtccgaaaaaagaagcaattgacaactctgccagg
acaaagacttataaagaacaaagggaaatgcttcctgcgtttgctgtacgtgagcagttg
ttgtctgttattcgtgataatcaggtacttattgtggttggtgaaacaggttctggtaag
acaactcagcttgctcaattcctgtacgaagatggctatgataccaatgggatgattggg
tgtactcaaccacgacgtgttgctgcaatgtctgtagctaaacgcgtgagcgaggagatg
ggtgttggccttggctccttagttggatattccattcgttttgaagatgtgaccagtccg
gacaccgtgataaagtatatgacggatggtgtattgttgcgagagtccttagtacaaaac
agtttggagcgctatagtgttatcataatggatgaagcgcacgaaagatcacttaatacg
gatattttaatgggattattaaagaagataatatcagtcagaagagatttgaagttgatt
gtaacttctgcaactatgaattcacaaagattctccgatttctttggaggtgcacctcaa
tttgccattcctggtcgtacataccccgttgatgttatgttttctaaaattccctgtacg
gattatgttgaaggcgcagttcggcaggcgcttcagattcatttatcgcagcctgcaggt
gatatactgatttttatgaccggtcaggaagatattgaggctacttgcgaaatcatggca
gaccgactaaatcaattagacgatgctccgaggctttccatccttccaatctactctcag
atgccagctgatttacaggcgaagatctttgaatctgctgaatcaggtgttaggaaggtc
gttgttgcaacaaacattgccgaaacctctcttacggtacatggtatatcttatgttgtc
gacagcggttactgtaaattgaaaatgtataatgctaaaatggggattgatactttacag
atcacccctatttctcaagcaaatgctaatcaaagatctggtcgtgcaggtcgtacaggg
cccggtctagcatatcgtttatatacggaattagcttatattcgcgaaatgtttcaaaca
actttaccagaaattcaaaggactaatctttctcatacggttctgcttttaaaatctctt
gggataaaaaacatactacattttgaatttatggatccaccaccagcgaagactttaatg
gcttctttatacgaactttggactttgggcgctttggataattacggtgaacttacagaa
ataggaagaaaaatgcctcttttcccaatggatccatcattgtcaaaacttattattatg
gctgaagactaccattgtactgaagaagtcatcacgattgtatcaatgttgtcagtaccg
tcagtattctatcgcccgaaggaaagggccgaagaaagtgatgcagctcgagagaaattc
aatgttccagaaagcgatcatcttaccctcttgaacgtttatttgcaatggagaagaaat
ggatgctctgattcatggtgtagtaaacattttttgcatggtaaaatattaaaaagagcc
agcgatgttcggcaacagttggtggaaattatgactactcaaaaaatacccatcaagtca
gctgggtctgaatgggacattatccgaaaagttttatgttcatcatacttccatcaggct
gcaacagctaaaggaatcggtgaatatacacatttgcgtagtggcatgccgtgtcatttg
cacgttacctccagtctgtatggactgggttatttaccggattatgttatttatcacgaa
ttggtgctaacttcgaaagaatatatgaatgttgttacaagtgttgacccatactggtta
gcagaatttggcggcgtttattattctttaaaagagcgtgttcgcaatgaaaccgagaat
tacgaacgtgtttactctagtaaaatgaagttggaagaacagattgaggcagatcgtgaa
atagatgctcagaagaagaactccaatgatgatgtaccaaaaaaacctgctagaaaagcg
gtgatacgagcgaaagccccacgtcgggtacggggattttaa
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