Schizosaccharomyces osmophilus (fission yeast): SOMG_02263
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Entry
SOMG_02263 CDS
T09274
Symbol
ckn1
Name
(RefSeq) ERCC8 DNA repair-like protein
KO
K10570
DNA excision repair protein ERCC-8
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03420
Nucleotide excision repair
som04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
SOMG_02263 (ckn1)
09124 Replication and repair
03420 Nucleotide excision repair
SOMG_02263 (ckn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
som04121
]
SOMG_02263 (ckn1)
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_02263 (ckn1)
Ubiquitin system [BR:
som04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
SOMG_02263 (ckn1)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
SOMG_02263 (ckn1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
ANAPC4_WD40
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_DCAF12
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_SPT8
eIF2A
Beta-prop_DCAF4
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
80875744
NCBI-ProteinID:
XP_056036736
UniProt:
A0AAE9WAP6
LinkDB
All DBs
Position
1:complement(join(4984152..4984876,4984917..4984995,4985045..4985162,4985205..4985309,4985361..4985508,4985557..4985593))
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AA seq
403 aa
AA seq
DB search
MNTFLLAREWGQESNASFRRQLLQHRLQTMALSQNKTIKRRHGTGLLGSVNALSIDNTTQ
QFMISGGANSSINVWNLESLDSNETNILMDTHNAIPARSSHRFGITDLHWFPFDNGIFTS
SSFDHTLRVWDAATLQEAYSFSIGEIVYSHAWSPVASHCLIAAAYRSPSIRLCDMQSGSY
THSLIGHTGNVLSVAWCPKNDYVLASGSADGTVRLWDIRKASASFACLDVHNKTKPIEQT
GRSHYGTVNGLAWTHDGTFLVSSGTDDRLRVWDMKTGLNTLRDFGPIIHNQTTSFAVHPY
IMTPSKNDDTYVLFPNDDGSLALINLLDGSFVQRLSMHVLKRINCVAYRSEKEQCFTGDM
SGNILIWCPKPLRDPLQASAIENRRNVLQEVYDSLTNVEVTYQ
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgtttcttttagccagagaatgggggcaggaatcaaatgcatccttccgacgc
cagctacttcagcatcgtcttcaaactatggctttgtcgcaaaataaaacaatcaagcga
agacatggtaccggcctccttggctctgtgaatgcgctgtctatagataatacaacacag
caatttatgatttctggaggcgccaattcttcaatcaatgtttggaatcttgaatctctt
gattcaaatgaaacaaacatacttatggatactcataatgccataccagcacgttcaagt
cataggtttggaattactgatctgcattggtttcctttcgataatggtatattcactagc
tcctctttcgaccatactttaagggtttgggatgctgcaaccttacaggaggcgtattct
tttagtataggtgaaatagtgtattcgcatgcctggtcacccgttgcatcgcactgtttg
attgctgcggcatatcgatcgccctctattcgtttatgcgatatgcagagcggtagttat
acgcacagtttaattggtcatacagggaatgtactatctgtcgcttggtgcccgaaaaat
gattatgtattagcttctgggtccgctgatggtactgttcggctttgggatattcgaaaa
gcctctgccagctttgcttgcttagacgtgcataacaaaacgaagccaatagaacagact
ggaagatctcattatggtaccgtaaatggattagcttggactcatgacggtacttttctt
gttagctctggaactgatgatcgcttaagagtttgggatatgaaaacaggactaaacacc
ttacgtgacttcggaccgattatacacaatcaaacaacatcttttgctgttcacccatat
atcatgactccctcgaaaaacgacgatacgtacgttttattcccaaatgacgatggatct
ttggcgttgataaatcttttagacggttcctttgtccagcgtctgtcaatgcacgttttg
aagcgtattaattgcgtagcttatcgttcagaaaaagagcaatgcttcactggcgatatg
agcggtaatattttaatatggtgtccaaaaccacttcgtgatcccttgcaggctagtgcc
attgaaaatcgtcgaaatgttcttcaagaagtttatgactctttaactaatgtcgaagtt
acttatcagtga
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