Schizosaccharomyces osmophilus (fission yeast): SOMG_02416
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Entry
SOMG_02416 CDS
T09274
Symbol
hrp3
Name
(RefSeq) CHD family chromatin remodeller Hrp3
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Brite
KEGG Orthology (KO) [BR:
som00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
som03021
]
SOMG_02416 (hrp3)
03036 Chromosome and associated proteins [BR:
som03036
]
SOMG_02416 (hrp3)
Transcription machinery [BR:
som03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
SOMG_02416 (hrp3)
Chromosome and associated proteins [BR:
som03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
SOMG_02416 (hrp3)
SLIK complex
SOMG_02416 (hrp3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CHD1-like_C
Chromo
Helicase_C
ResIII
HDA2-3
DEAD
Cdh1_DBD_1
CHDCT2
CDH1_2_SANT_HL1
Motif
Other DBs
NCBI-GeneID:
80875897
NCBI-ProteinID:
XP_056037262
UniProt:
A0AAE9WB63
LinkDB
All DBs
Position
1:join(5328193..5328285,5328335..5332300)
Genome browser
AA seq
1352 aa
AA seq
DB search
MSEIIPGDVSSKRKLDSDESFDPELYGLRRSGRTRINPGKYIDAELDEELPSRQRHGTRN
GTHRQRNISDDDDDDDENAESLSSSGDEDSGGSSYGDNARRSSRRRKPTPDDALDEVRFS
SRNSKGVNYNEDAYFESIEDEEQLGDGYDYDAEAPEEPEETKAIDCVLDHRLIEGRDGSK
ITEDYEYLIKWMNMSHLHCSWETYANLVGFRGAKKVDNHTKQVIMLEREIREDPTTTRED
IEAMEIDIERKRDSYEEYKQVDRIVYQYRNPEGSLEYLVKWKHLSYDFCTWESADTIEPI
APEQIQSFHEREHSPLMPSRGTNYGHTRPKYRKLEQQPSYIIGGELRDFQLTGVNWMAYL
WHKDENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFIVIVPLSTVPSWQETFDLWAPD
MNCISYLGNTASRQVLRDYEFYVEGTQKLKFNLLLTTYEYVLKDRSVLGNIKWQYMAIDE
AHRLKNSESSLYETLSQFKNSNRLLITGTPLQNNIKELAALVDFLMPGKFDIREEINLEA
PDQEQETYIRNLQQHLQPYILRRLKKDVEKSLPSKSERILRVELSDLQTYWYKNILSRNY
RVLTQSIMSGSQISLLNIVIELKKASNHPYLYDGVEESWMQKIGSQGRREEVLKGLIMNS
GKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYMALRGYPYQRLDGTVPASVRRVSI
DHYNAPGSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHV
MVYRLLSKDTIEEDVLERARRKMILEYAIISLGVTDKQKDAKSDKYSAEELSAILKFGAS
NMFKAEDNQKKLEDMNLDEILEHAEDHDTSNDVGGASMGGEDFLKQFEVTDYKADVSWDD
IIPLNERQRYEEEDRRKEQEALKREIELNNRRGNRPYPIEMTASSPSNSVASEKKTKKQK
LRDEVLLEKEIRLLYRAMIRYGRLQHRYNDIVKYADLSTQDAHLVKKVASDLEAVCQRAI
NAAEKEANAEQANQKSRKALLITFRGVKNINAETLIQRLNDLDVLYEAMPSSGYSSFEVP
VHLRSVHGWSCEWGKREDSMLLAGICKHGFGAWLEIRDDPELKMKDKIFLDDNKVDNPGE
KDKEKEKKVPSSVHLVRRGEYLLSALREYHRKVEEGVETPKPAPKRQAQNKKAANKSNKN
GQRSESVTRTPSPTVSESRKKHVTKEVKSEALHRESPRTSVEPSIKQEESDQPEGDGLTS
EQKARCKELMYPVRKHMKKLRKGSTGLERTQLVKLFTECLTTIGGHIDATVTKLPDNEKE
AVRKDLWMFVCYFWPKDEVKYTSLITMYQKMK
NT seq
4059 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaaattatacccggagatgtctcgtctaagcgaaagctagactctgacgaaagt
tttgatcccgaactttacggtcttcgacgatctggacgtactcgtataaatccaggaaag
tatatagatgctgaattagatgaggaattaccctcaagacagcgtcatggtacgagaaat
gggactcatcgccaaagaaatattagtgatgacgatgatgatgatgatgagaacgctgaa
tccttgtcttcatcaggggatgaggacagcggtggcagttcttatggtgataatgctcgt
aggagctccagaagaaggaaaccaacacctgacgacgctctagatgaagtaaggttttcc
tcgcgtaattctaaaggcgtaaactataatgaagatgcctattttgaatcaattgaagat
gaagagcaactcggtgatggctatgattatgatgcagaggctccagaggagcctgaagaa
acaaaagctatagactgtgttttagatcacaggcttatagaaggacgtgatggatcaaaa
attacagaagattacgaataccttataaaatggatgaatatgtcccacttacattgcagc
tgggaaacttacgctaatttggttggtttccgaggagcaaaaaaagttgataatcatacc
aagcaggttattatgttggaacgtgaaatacgtgaagatccaactacaaccagggaggac
attgaagcgatggagattgacatagagcgcaaacgggatagttacgaagaatacaagcag
gttgatcgcattgtctatcagtacaggaatcccgaaggttctttggaatacttggttaaa
tggaagcatctctcatatgatttctgcacatgggaatctgctgacacaattgagcctata
gcccctgaacaaatacaatctttccatgaaagagagcatagcccattgatgccatctcgt
ggcactaactatggtcatacccgtcccaagtatcgcaaactagagcagcagccttcttat
attataggtggtgaattacgtgacttccaattgacaggtgttaattggatggcctatctt
tggcacaaggatgaaaatggtattttggcagacgaaatgggtttaggtaaaactgtacaa
actgtggcttttctttcttatttggcccattctttaaggcagcacggaccgtttattgtg
atagtaccgttgtccacggtcccttcatggcaagaaacttttgatctttgggctccggat
atgaactgcatcagttaccttggtaataccgcttctagacaggttctacgagattatgag
ttttacgtcgaaggaactcaaaaattaaagttcaatttgctgcttactacttatgaatat
gttctaaaagatcgttcggttttaggtaatatcaagtggcagtacatggcaattgatgaa
gcccaccgtttgaaaaacagtgaatcctccctttatgaaacattatcccaattcaaaaat
tctaacagattgcttattacgggtactccacttcaaaataacattaaagagcttgcagct
ctagtcgattttttgatgcccggaaaatttgatatacgggaggaaatcaatttggaagct
ccggatcaggaacaagagacctatattcgaaatctgcaacaacatttacagccttatatt
ttaagaagattgaagaaggacgttgaaaagtccttgccttctaaatcagaacgtatcctg
cgagttgaattgtctgatttgcaaacctattggtacaagaatattttaagccgtaactat
cgagttctgactcaaagtataatgtctggtagccagatttcacttttgaatatcgtgata
gaattgaagaaagcaagtaatcatccatatttgtacgacggagttgaagaatcgtggatg
cagaaaattggttctcaaggacgacgagaagaagtacttaaaggcttgattatgaacagc
gggaaaatggttttacttgataagttactctccaggctacgccgagacgggcatcgtgtc
ctaattttcagtcaaatggttcgtatgctagatatacttggtgattatatggcattaaga
ggctatccttatcagcggttggatggtactgttcctgcatctgttcgaagagtttccatt
gaccattataatgctcccggaagtcctgatttcgttttcttgctttcaactcgagctggt
ggtctaggtattaatctgatgacagctgacactgttattatttttgattccgattggaac
ccacaggccgatttgcaagccatggctcgtgcccatagaattggtcaaaagaaccatgtt
atggtttatcgtcttctatcaaaagacacaattgaggaagatgtgttggaaagagccaga
aggaaaatgattttagaatacgcaattatttctcttggtgtcactgacaaacaaaaggat
gccaaaagtgacaagtattcggcggaagagctcagtgcgattcttaaatttggagcttcc
aatatgttcaaagcagaggacaatcaaaagaagctggaagatatgaatttggatgaaata
ttggagcatgctgaagatcatgacacatcgaatgatgttggtggtgccagtatgggtggt
gaagattttttgaagcaattcgaggttacagactacaaggccgacgtttcttgggatgat
attattccgctaaatgaaagacaaaggtatgaagaggaggatcgacgaaaagaacaagaa
gccctcaaacgggagattgagttaaataataggcgtggaaacagaccgtacccaattgaa
atgactgcctcttctcctagtaattcagtggcttctgagaaaaagacaaagaaacaaaag
ttgagggatgaggtgttgttagaaaaagagattcgattgttatatcgtgcgatgatccgg
tatggtcgtcttcaacatcgatataacgacattgttaaatacgcagatctatcgacccaa
gatgctcatttagttaaaaaggtagcttccgacttggaagcggtatgtcaaagagccatc
aatgctgccgaaaaagaggccaacgctgagcaggcaaaccaaaagtctcgaaaagcactg
ttgataacttttaggggagtaaaaaacattaatgctgaaactttgattcaacgtttaaat
gatcttgatgtcttatatgaagcaatgccatcatcaggatattcctcttttgaggttcct
gtgcatcttcggtctgtccacggttggtcatgtgaatggggaaagcgcgaagactccatg
ctactagcgggtatttgtaaacatgggttcggagcttggctagagattcgtgatgatcct
gaattaaaaatgaaagacaagatctttttagatgataataaagttgataatcccggagag
aaggataaagaaaaagagaaaaaggttccttcttcagtacatttggtacgacgaggcgaa
tatcttttgagtgctttacgagaatatcaccgtaaggttgaagaaggcgttgaaactcca
aagcccgctccgaaaaggcaggcccaaaacaagaaagcagcgaacaaatcaaataagaat
ggtcaacgcagtgaaagtgtaactcggactccctctccgacggtttctgaatcgcgaaag
aaacatgttactaaagaagtgaaatcagaagcacttcatagagagtcgcctcgcacttct
gttgaaccatccatcaaacaggaagaatctgaccaacccgaaggtgatggattgactagt
gaacaaaaggcaagatgcaaggagctgatgtatcctgttcgtaagcatatgaaaaagctt
cgaaagggttccactggtttggaaagaacacaactggtgaagctatttacggagtgttta
acgacgataggaggacatatagacgctaccgttacaaaactccctgacaatgaaaaggaa
gctgttcgtaaggatttgtggatgtttgtttgttacttttggcccaaagatgaagtcaaa
tacactagtttgataaccatgtaccaaaagatgaagtga
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