Schizosaccharomyces osmophilus (fission yeast): SOMG_02646
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Entry
SOMG_02646 CDS
T09274
Symbol
mtl1
Name
(RefSeq) MTREC (exosome adaptor) complex RNA helicase subunit Mtl1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_02646 (mtl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_02646 (mtl1)
03041 Spliceosome [BR:
som03041
]
SOMG_02646 (mtl1)
03009 Ribosome biogenesis [BR:
som03009
]
SOMG_02646 (mtl1)
03016 Transfer RNA biogenesis [BR:
som03016
]
SOMG_02646 (mtl1)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SOMG_02646 (mtl1)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
SOMG_02646 (mtl1)
Spliceosome [BR:
som03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
SOMG_02646 (mtl1)
Complex C
U4/U6.U5 tri-SnRNP related factors
SOMG_02646 (mtl1)
Ribosome biogenesis [BR:
som03009
]
Eukaryotic type
Pre-60S particles
Helicases
SOMG_02646 (mtl1)
Transfer RNA biogenesis [BR:
som03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
SOMG_02646 (mtl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
80876126
NCBI-ProteinID:
XP_056037431
UniProt:
A0AAF0AW67
LinkDB
All DBs
Position
2:306740..309841
Genome browser
AA seq
1033 aa
AA seq
DB search
MENDLDMPGEGERIASLNMDGFFRERSMDQNTDEKNNKLHEYDQTRPSTDTPEIQKVKET
SKKKLFAPETIYNLQTNFDEEGAQKGIFHDERHDRSFALHKVVVPPDYKYSSIEEHVPND
PPAKSYSFQLDPFQATAVACIERSESVLVSAHTSAGKTVIAEYAIAQSLKNKQRVVYTSP
IKSLSNQKYRELLSEFGDVGLLTGDVSINPTASCLVMTTEILRSMLYKNSELMHEVAWVI
FDEIHYMQDKDRGVVWEETLILLPDAVRYVFLSATLPNAMQFARWIADTHYQPCHVVYTD
YRPTPLQHFIYPHGADGIYMIVDEKNRFKDESFSKVVEVLQSNVESRENHQSRKKGKRTT
SLQRIISMVITNQYDPLIVFCFSKKECEANVFQLNKVDLNDDEKKDLINEIIDSALLQLT
EEDRKIPQFDHMRSFLLRGIGFHHSGLLPIMKELVEILFQEGLVRILFATETFAIGLNMP
ARTVLFTNAQKFSGTNFRWLTSGEYMQMSGRAGRRGIDSKGLSIVMVDQSIDEQTARALM
NGQPASLYSAFHLSYNMILSLMRIEGISPEDLLRRSFYQFQKMESIPLLIHELDEYKMKE
KSIEIKDEQSLKRFHELKLQLERYGKDIKHTIMEPENCLPYLQPGRLAQVKIHETLFPWG
IIVNSTKRTISSSQKVNSQDMYVVDILLPLSSRSTSNSNLRSAQLSAPLPSEKPVYEVIA
VFLSSIENFSCLRVLLPRDLSSHESRRSTYQNVLEVQKKLNDDMPLLDPIEHMNIKEATL
KLHMRKVEILEPKFLKSPYYRDPSFRSEYHKYTDKLELKNSIKDLSTKIGSTESIIHLKE
LKSRQRTLRRLGFTTADNVIDIKGRVACEISTGDELLITEMIFQGIFNSLSPDIFAATLS
CFVYQEKSDVSSLNLKEPYSATYKAILNIARRIITVSVESRLNVDEDEYVHQFKPDMMEA
VSKWINGGTFLEICEMTKLYEGSIVRTFRRLSELLKQFRNAAVVLGNYELQEKSVITEQL
LYRDIISSSSLYF
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atggagaatgatttagacatgcctggagaaggggaaagaattgcttccttgaacatggat
ggattttttcgtgaaagatccatggatcaaaatacggacgaaaaaaacaacaaacttcac
gaatatgatcaaacaagaccatcaactgatacaccagagatacagaaagtaaaagaaact
agtaagaaaaaactgtttgctccggaaaccatttacaaccttcagacaaatttcgatgaa
gaaggagcacaaaaaggaattttccatgatgaacgccatgatagaagttttgctctacac
aaagtagtagtgccgcctgactacaagtacagctccattgaggagcatgttcccaacgac
ccgcccgcaaaatcatattcttttcagcttgatccatttcaagctactgcggtagcttgt
attgaaagatctgaatcagtcctagtgagcgctcatacttctgcaggtaaaacagtaatt
gcagaatacgctattgcccaatcccttaaaaataagcagcgggttgtttacaccagtccc
attaaatctttgagcaatcaaaaatatcgcgagttactttctgaatttggcgatgttggt
cttttaaccggcgacgtatccatcaatccaacagcaagctgtttagtaatgacgactgaa
attttgcgatccatgttatataaaaattccgagcttatgcatgaagtagcctgggttata
ttcgatgaaatccactacatgcaagataaagatcgaggagtagtttgggaagaaaccctc
attcttctaccagatgcggttcgctacgtctttctctctgcgacacttcctaatgctatg
cagtttgctcgttggattgctgatacgcattaccagccttgtcatgtcgtatatactgat
tatcgaccaacaccgttgcagcattttatatatcctcatggcgctgatggaatatacatg
attgtcgatgaaaagaatcgctttaaagatgaaagcttttcaaaagtagtagaagtgctc
caaagcaatgttgaatcgcgcgaaaaccatcaatccaggaaaaagggcaagcgaaccaca
tcactgcaacgcataattagtatggttataactaatcaatatgatcctttaattgtgttt
tgctttagcaaaaaagaatgtgaagctaatgtcttccagttgaacaaggttgatcttaat
gatgacgaaaaaaaggatctaatcaatgaaattatcgattctgctctacttcaattaact
gaagaggatcggaaaattccgcaatttgatcatatgagatccttccttttgcgaggaatt
ggctttcaccattctggactgctaccgattatgaaagaactagtggaaatcctttttcag
gagggactagttagaattctgtttgctactgagacgtttgccataggtttgaacatgcca
gcaaggacggtcttgtttacaaacgctcaaaagttctctggtactaactttcgttggcta
acgtctggagagtatatgcaaatgagtggtagagctggtagacgaggtattgactcaaaa
ggcttatccattgtgatggtcgatcagtctatcgatgagcaaactgctcgtgcattaatg
aacggtcagccggcatctctttattccgcctttcatttaagctataatatgattttaagc
cttatgcgaattgaagggataagtccagaggaccttttacgaagaagtttttaccaattt
cagaaaatggaatcaattcctttacttatccacgaattagacgaatacaagatgaaagag
aaatctattgaaataaaagacgaacaatccttgaaaagattccatgaattgaaattgcaa
ctggagcgctacggaaaagatataaaacatactattatggaaccagaaaattgtctacca
tacttacaacctggaaggttggcgcaggtaaaaattcacgaaacattattcccttggggg
attattgtaaattccactaagcgaacaatttcttcatctcaaaaagtgaattctcaggat
atgtacgttgttgacatattactaccattatcatcgagatcaacttctaatagcaattta
cgatctgctcaattatccgcacctttgccaagtgaaaagcctgtttatgaagtcattgcg
gttttcttgtcctcgattgaaaatttttcttgtctcagagttctgcttccgagggatttg
agttcccatgaaagcagaagaagtacttatcaaaacgttcttgaagttcagaaaaagctg
aacgacgatatgcccttgctggatcctattgaacacatgaacataaaagaagctacattg
aaactacatatgagaaaagttgaaatattggaacccaagtttctgaaaagcccctactat
agggacccatcgtttcgatccgagtatcataaatatacggataaattggagttaaagaat
tctattaaagatttgagtacgaagattggttctaccgagtcgataatccatttaaaagaa
ttgaaaagtcggcagcgaacgcttcgacgccttgggtttactactgcagacaacgtgatt
gatattaagggcagagtagcttgtgaaataagtacgggtgacgaacttttaataaccgaa
atgatatttcaaggcattttcaattctctgtctccggatatttttgctgctactttaagt
tgttttgtatatcaggagaaatcagatgtctcatcacttaatcttaaagaaccatattct
gcaacgtacaaagctatactcaacattgcaagacgaattataacggtatcggtggaaagt
agattgaatgtggacgaagacgaatatgttcatcagtttaagccggacatgatggaagcc
gtctctaaatggataaacggaggcaccttcttggaaatatgtgaaatgacaaaattatat
gaaggaagtattgttcgaacgttcagacgattatcggagcttttaaaacaatttcgaaac
gctgcagttgttttaggcaattatgaactacaagaaaaatctgtcatcacagaacaattg
ctctatcgcgatataatttcttcttcttcattgtatttttaa
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integrated database retrieval system
