Schizosaccharomyces osmophilus (fission yeast): SOMG_02857
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Entry
SOMG_02857 CDS
T09274
Symbol
upf2
Name
(RefSeq) nonsense-mediated decay protein Upf2
KO
K14327
regulator of nonsense transcripts 2
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03013
Nucleocytoplasmic transport
som03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SOMG_02857 (upf2)
03015 mRNA surveillance pathway
SOMG_02857 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_02857 (upf2)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
SOMG_02857 (upf2)
mRNA cycle factors
P-body specific factors
SOMG_02857 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
80876337
NCBI-ProteinID:
XP_056037562
UniProt:
A0AAE9WBQ7
LinkDB
All DBs
Position
2:complement(740626..743787)
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AA seq
1053 aa
AA seq
DB search
MSKEELLDKLNVYLNDRQLAIQTKNGDANGFPVQKSLDSSLKKNTAFMKRCRTSLTADNY
DLFIKEIKSLSLGKFVPEITLSIAEGLSKCRSVKDIQAAVKIVFFLYQRFSVSFIRPLLA
NLYSMLYPSPADSISGNLVKSASAVAVSETIPNKGNSINAAKTRALLRIFVEFWLHGLVR
TPDDFKDLLPAVYTSGKKFRKGMLEEKAPQTPIVVLLLEDVLAAPSNFSLLPIVSSVVRS
YRYELFSSYEALPGENEINQRINSVCDSHWRLQLRIQLDRYYQDLIGYIELRQHEFEEYR
DRLSEQDFLENTLEGTSNKAEDFLKSIEGDIANGLSICEALNQSFPSNIKEMQDSFHKKR
EEVMSIQNNILNAEVLVQTGAVQLWDSEEEHRFYETFPELPNLEFVKKKSFETNGDQETK
PEASTEDSQKLTKPSKSVSVKIDNLLQTLPNFMSAEQVDQAALEFLFLNTKASRNRLIKA
FCNIPRTSSFLVPYYIRFARIVTPLAPEIASALVEHARGAFRRMMNRKAKHEYDTRTLIV
RYVSELTKFRLMPFSYVFDCYKMCLLDFTSFDLEVLSLLLENCGRFLFRFPKSSLQITSL
LEAVQKKKLAAALPAQEQLILDNALYFVNPPKTSSERVRKRPLKEEFLRYILHIRLNETN
LTATIALLRKFNWKTDFEILYSTFMEVWNMKYECLNSFASLVASLYKTHPDFCIYVIDDT
VDSLLTSIDSSSFGDSQKRLAQAKFLAELYCVRLLDVRSIIGILFYLLPPDKFKNILQFS
PPGAISKENELFRLRMIALFLSTCGSSLVRSKTRKTMLTYLLAYQCYFLAQPEVPLDMQF
EFDDVVPKVRPSMKVYKNFDEAWTALAERIQSGIDDHDQDDEEGSIVQSEKSNESENELE
ANDWEDNEENEDSSDDSESEEEISIDMDDPEIFNSDDEELDEERIHTDEIDEELNRMMND
SLSSRAHERGIAFDVPLPLRNTSGDASFSDLNNLLTENEENVKFTLLTKKGNKQRSQVLD
VPYHSVLAQSTKSRQEEELMERKRMKEMVLNYD
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaggaagaactgttggataaacttaatgtgtatttgaacgacagacaacttgct
atacagacaaaaaatggagatgcaaacggatttccagtccaaaaatcattagattccagt
ttgaaaaaaaacactgcttttatgaaaagatgcagaacttctttaactgctgataattat
gacttattcattaaagaaattaagtctctttcgctgggaaagtttgtgcctgaaatcact
ttgtccatagctgaaggactttcgaaatgcaggtccgtcaaggatatccaagccgctgtg
aagattgtgtttttcctttatcaaaggttttcggtttcatttataagaccgctattggct
aatctgtattctatgctgtatccttcgcctgcagactcgatctcaggaaaccttgttaag
tccgcgtccgctgttgcggtatctgaaacaattcctaacaaggggaacagtattaatgct
gcaaaaacaagggcccttctgagaattttcgttgaattctggctccatggacttgttcgt
acccccgacgattttaaagatctccttcctgctgtatatacttctgggaaaaaattccgt
aaaggtatgcttgaggagaaagcacctcaaactccaatagttgttctcttgcttgaagat
gtacttgcggccccctcaaatttttctttattgccaatcgtctcctcagtagtcaggtca
tacaggtatgaactgttctcttcttatgaggcattacctggtgaaaatgaaataaatcaa
cgtatcaatagcgtttgtgattctcactggcgacttcaacttcgaatccaacttgaccgt
tattatcaagatttaattggttacattgaacttcgccagcatgaatttgaagaataccgg
gatcgcctcagcgagcaagattttttggagaacacattggagggtacttcaaataaggct
gaggatttcttgaagtctattgaaggcgatattgcgaatggtctttctatatgcgaagct
ttaaaccaatcgtttccttcaaacataaaggaaatgcaagactctttccataaaaagcga
gaggaagtaatgagtatacaaaataacatacttaatgcagaagttctggttcagacaggt
gctgtccaactgtgggattccgaagaagaacatcgattttatgaaacatttcctgaacta
ccgaatttagagtttgtcaagaagaaaagctttgagaccaatggggatcaggaaacaaaa
ccagaagcttctacagaagattctcaaaagcttactaaaccatccaagtctgttagcgtc
aagattgataatcttttgcagacacttccgaatttcatgtcagccgagcaagtcgatcaa
gctgctttggagtttctttttttgaatactaaggcttccagaaatcgccttataaaggcc
ttttgtaatattcccagaacaagttcttttctggtcccttattacattcgttttgctaga
attgtgactcctctcgctccagagattgcatctgctctcgtagagcatgctcgtggagca
ttccgtcgcatgatgaataggaaagcgaaacatgagtatgatactaggactttaatagtt
cgctacgtgtcagagcttacaaaatttcgtctgatgcccttttcttatgtgtttgactgt
tataaaatgtgtctgctagactttacttcttttgatctggaagttttgtccttgctttta
gaaaactgtggtcggttcctttttagatttcccaagtcttctctacaaataacttcattg
ttagaagctgttcagaaaaagaagctagctgctgctcttcccgcccaagagcagctaata
ttggacaatgctttgtattttgtgaatccaccaaagacaagctctgaaagggtcaggaaa
cgtcccttaaaagaagagtttttgagatacatcttacacattcgtctaaacgaaacaaat
ttaactgctactatagctttacttcgaaaattcaactggaaaaccgattttgaaatacta
tactcgacatttatggaagtatggaatatgaagtatgagtgtttaaattcttttgcaagc
ttagttgcttctttatataaaacacatcctgatttttgcatttatgtcattgatgacacg
gtggattcacttttaacatccatagattctagcagttttggcgatagccagaagcgattg
gcacaagcaaagtttttggctgagctttattgtgtgagattactagatgtaagatcaatt
atcggaattttattctatctgctccccccagacaagtttaagaatattcttcagttttct
ccacctggtgccataagtaaagaaaatgagttgtttcgacttcgcatgattgcacttttt
ctgtcaacgtgtggttcttcacttgtacgatcaaagaccaggaagacgatgctgacatat
ttattggcctatcaatgctattttctagcgcaaccagaggttcctttagatatgcagttc
gagtttgatgatgtggttccaaaagttcgccctagtatgaaagtgtataaaaatttcgat
gaagcatggactgctttggctgaaagaatacaaagtggaatagacgatcatgatcaagat
gatgaagagggttctattgttcaatcagaaaagtcaaatgaaagtgaaaatgaacttgaa
gctaatgattgggaagacaacgaagaaaatgaagattcgtcggatgactcagagagtgaa
gaggaaatcagcatagatatggatgatcctgaaatttttaacagcgatgatgaagagtta
gacgaagagcgcattcacacagatgaaatagatgaagaattaaatcggatgatgaatgac
agtttatcttcgagagctcatgaaaggggcattgctttcgatgttcctcttcctttaaga
aacacaagtggagatgcttccttttcagatctaaataacttgttaacggagaatgaagaa
aatgtaaagtttacactcttaaccaagaaaggcaacaaacaacgttctcaggtgttggat
gttccataccattcggtgctagctcagtctaccaagtcaagacaagaagaagaattgatg
gaacggaaacgcatgaaagagatggtgctaaactacgactag
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