Schizosaccharomyces osmophilus (fission yeast): SOMG_03190
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Entry
SOMG_03190 CDS
T09274
Symbol
msh2
Name
(RefSeq) MutS protein-like protein 2
KO
K08735
DNA mismatch repair protein MSH2
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SOMG_03190 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_03190 (msh2)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
SOMG_03190 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_22
Rad17
Motif
Other DBs
NCBI-GeneID:
80876670
NCBI-ProteinID:
XP_056037651
UniProt:
A0AAE9WCN4
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All DBs
Position
2:complement(join(1506573..1509401,1509576..1509658,1509712..1509748))
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AA seq
982 aa
AA seq
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MASKSSSSSSMNERTDEARMFSFYEKMPKDSNTLRVFDRGETYVAIGEDASFVAENAYHT
TSVLKYHNQSNLSFCTMFPSLFIKFAEEVLSNYAKRVEIWGSNKSKTGFELLNQASPGNM
QMIEDLMMNSDATKDPTVNVDNSGGSILLAVTTRVKQDQRVVGVAFIDPFTRKIGVSEFV
DSDSYTNFEALLVQTGAKECLISQQDGENAATGTSITRAELNRLRNIIEGCGALVTGIRN
SYFSPKDVELELAKVLDVPVTHARLPELSLQLAMSSCNAVLRYLGPSLVDPIPSDDVEVQ
KDLARKFHLYEHNLEQYMRLDVAAVRALNLLPPANGNAHRTMSLYGLLNHCRTPMGSRQL
RRWIVQPLLDPKAIRRRHNLVSAFIEDPEVRQLLLDDDHLLRSIPDVPRLCRRLIRGSSS
LEDVVRIYQMAKALPNIVTALDSLKSEHKELVDQVYTTPLSAHCKNLTKLIELVETTIDL
DALDAHRYIIRAEFDEELLELRQRLEELQSSIFDEHKQAGVDLQQDTEKKLHLEQHHLYG
WCLRLTRAEAGCLRGRNSRYSELSTQKNGVYFTTKRLHNLNSTYMDYQKSYRYHQNGLAR
EVIKIAATYSSPLEAVGQILSHLDVITSFSLASTLAVTAYVCPTILDSRMEIDTTAGDQE
KTIDIVALEENPDINELRSHLRSSHCACVELKQARHPCLEAQDDVNFIPNDIFLKRKESE
MLIITGPNMGGKSTFIRQAGVITVMAQIGCFVPCNSATIDVVDSILARVGAGDSQLKGVS
TFMAEMLETATILRSATKRSLIIIDELGRGTSTTDGFGLAWAITEHIVRKINCFCLFATH
YHEMTRMSEEIPTVKNLHVTAHIGDTNARDVALLYNVCEGASDRSFGIHVAEMAHFPAKI
IEMAQAKAIELEAEDEDPPVEDAEGRAKKEGITIIRKLMLEWQNQVGKDMPKEEMLQKFQ
QVLKSHASDIEANTWLQSKKNI
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atggcctccaaaagttcgagcagctcgtctatgaacgaaagaaccgatgaggctcgtatg
ttttcattttacgagaagatgcccaaagactcaaatacattacgcgtctttgatcgtgga
gaaacatatgtagccattggagaagacgcttcttttgtcgccgaaaatgcctaccataca
acttcagtccttaaataccataatcagtctaatctctctttctgtactatgtttccttct
ttgttcataaaatttgctgaagaggtattatcaaactatgcaaaacgagtggaaatttgg
ggctccaacaaaagcaaaaccgggtttgaattgctaaatcaagcaagtcctggtaatatg
cagatgattgaggatttaatgatgaacagtgatgcgacaaaagatcctactgttaacgtt
gataattcgggtggttctatattactagcagttactacccgtgtgaaacaggatcaacgt
gttgtcggtgtagcgtttatagacccgttcacaaggaaaataggtgtctccgagttcgtt
gattcggattcgtacacaaatttcgaagcgcttcttgtccaaactggtgcaaaggaatgt
cttatctctcaacaagacggggaaaatgctgcaaccgggacgtcgattaccagagctgaa
ttaaatcgccttagaaacataatagaaggttgtggtgcgttggttactggtatacgaaac
tcgtatttttctccaaaagacgttgaattggagcttgcaaaggtgttggacgtcccagtc
acccatgcacgtttaccagagttaagtcttcagctcgccatgagctcgtgtaacgctgta
ttacgatatttgggaccaagcttggttgatccaattccttcggatgacgttgaagtacaa
aaggatcttgcacgaaagtttcatctatatgagcacaatctggagcagtatatgcgcctg
gatgtagctgcagtacgtgcattgaatttgttgcccccagccaatggaaacgcgcatcgt
acaatgagcttgtatggtttgttgaaccattgtaggactccaatgggctcgagacaactt
aggcgatggatcgttcagcctcttttagacccaaaggctattagaaggagacacaatttg
gtttctgcttttattgaagatccagaagttcgacagctcttgttagacgatgaccacctc
cttcgttccatccccgatgtgcctcgactttgccgacgtcttattcgaggttcttcaagt
ttggaagatgttgttcgaatttatcaaatggcgaaagctcttccaaatattgtaactgct
ttagactccttgaaaagtgagcataaagagttagtcgaccaagtctacacgactccactg
tccgcccattgtaaaaatctaacaaaacttattgagctggtggagactaccattgattta
gatgcacttgatgctcatagatatattattcgtgccgaatttgacgaagaattattggag
ttacgacaaaggcttgaagagcttcaaagctcaatttttgacgaacacaagcaggcaggc
gttgaccttcagcaggatactgaaaagaaattacatcttgagcaacatcatttgtatgga
tggtgtttgcgtcttacgagagcagaagctggctgcttacgcggacgtaattcccgttat
tcggaattatcaactcagaagaatggtgtctactttactacgaagcgtctgcacaatctc
aatagtacatatatggattatcaaaaaagttatagatatcaccagaatggactagctcga
gaagtcatcaagattgctgcaacctatagttctcccttagaagcggttggccaaatttta
tcacacttggatgttataacaagtttttctcttgctagcacacttgcggttaccgcatat
gtgtgtccaacgatactggattcaaggatggaaatagatacaacggccggtgatcaagaa
aagacaattgatatcgtagctttggaagaaaatccagatatcaatgaattgcgttcccac
ttacggtcttctcattgtgcttgcgttgaattgaaacaagcgagacatccttgtttagaa
gcacaggatgatgttaactttattcctaacgatatttttcttaaacggaaggaatctgag
atgctcataatcactggaccaaacatgggaggaaagtccactttcattcgacaagctggc
gtcattacagttatggctcaaattggatgtttcgttccttgcaattcagctactattgat
gttgtagatagtattctcgcccgtgttggagccggtgactctcaattgaaaggtgtttcc
acttttatggcagaaatgctagagactgctacgattttaaggtctgcaactaagcgttct
ctcattataattgatgaattaggaaggggtactagtaccacggacggtttcggtttggca
tgggcaattacggagcacattgttagaaaaattaattgcttttgtctttttgctacgcat
tatcatgaaatgactcggatgtcggaagaaattccaactgttaaaaacttgcatgtgaca
gcccacataggagataccaatgctcgtgacgttgcactgctatataatgtttgcgaagga
gcaagtgatagaagctttggtattcatgtagcagaaatggcgcatttcccagccaaaatc
atagaaatggcccaagcaaaagccattgaattggaggccgaagatgaggatccaccagtg
gaagatgctgaaggacgggcgaagaaagaaggtatcaccataattcgaaaacttatgtta
gaatggcaaaatcaggtgggaaaggatatgccgaaagaggaaatgctccaaaagttccag
caagtattaaagagtcatgcttcagatattgaggcaaacacatggttgcaatccaagaag
aacatctga
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