Schizosaccharomyces osmophilus (fission yeast): SOMG_03199
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Entry
SOMG_03199 CDS
T09274
Symbol
pdc2
Name
(RefSeq) topoisomerase II-associated deadenylation-dependent mRNA-decapping factor Pdc2
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_03199 (pdc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_03199 (pdc2)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SOMG_03199 (pdc2)
mRNA degradation factors
5'-3' decay
Decapping complex
SOMG_03199 (pdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
80876679
NCBI-ProteinID:
XP_056037901
UniProt:
A0AAE9WF69
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Position
2:complement(join(1529668..1529965,1530015..1531839,1531926..1532026,1532098..1532174))
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AA seq
766 aa
AA seq
DB search
MSFFGFDTTLPKEQMAPKNGAYDEDGIDFEETYDDLADRLEEEGDDMNDETFGVSAGNVG
RDFDFFNQTAHVSTKLENEQDDTKSPKDKVFDEAAQASLLPQVNPMVASAASKVEENVDI
SANTNMLSDLRPMASIWETIVPEKPTVQAAPPEVSSFQNRLGAQNSEKVISLQELEEQLF
NSLNVPSAGPKAEESVASTMPAVNSVASPAVQAPPPSTLTHDTFAALDPAVASIGNVSFP
TQQSNVPNPGLPLPAMMQPSQLFANPNLSPPQAPPVVYPTNMVYGAEPVPPVPLLNLVQQ
ENFAQARILDEKRQKLERDHILMAQCAGLMTRSDKSFIARIQISQLMSEDPESEDFYYRV
YSIIRGRNPSEEDSSHFIQTYLGPSSNRRRGRRSENPMQRLQQQLQKLVSSAKERPKTTQ
LSLEGALGKIAINTVRTPRQLLNVKRPSEHAINAKETTFKGFATKKDVLQAIERIYDWLL
DFEHSLRKLSVSNVEDEETFNEWKNDLSHKLESIWNVLHINESLDSSSKARPPFLSVISH
PKGMRLLPRLLPHLSKEQQYAILTVIVGNVDSLNIVLNGTFDANGELPAGIPAEMTSFTQ
FVIPSLLTIVNELGMSNVNTLFSQLLGRSNPLYLIQTKIGLSFLTMLISRAEILKQTGSG
TEEEKENWERIFNGLFDCLKDHFATVFPPPNARAYADESYPWEFLAACATAASSDQHFVL
VSETRDRVLDNIITSKRSPEEIALVRIANVNLFLNAMGLDARQLSA
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttttcgggttcgatacaacccttccaaaggagcagatggctcctaaaaatgga
gcatacgatgaagatggaattgattttgaagaaacgtacgacgatttagcagatcgactt
gaagaggagggagatgatatgaacgacgaaacctttggggttagcgccggaaatgttggt
cgtgactttgattttttcaatcaaactgcacatgtttctaccaaattagaaaatgaacag
gacgataccaaaagtcccaaggacaaggtttttgatgaagccgcgcaagcttcattactt
cctcaggtaaatccaatggttgcgtctgcagcaagtaaggttgaagaaaatgtcgatatt
tcagccaatactaatatgctttcggatttgagacccatggcctctatctgggaaaccatt
gtacctgagaaacctactgttcaagcggcccctcctgaagtatcaagctttcaaaatcgt
ttgggtgcgcaaaacagtgaaaaggtaattagcctgcaagaacttgaggaacaacttttc
aattcccttaatgtacctagtgctggccctaaagctgaagaatctgttgcttcgacaatg
cccgccgttaattctgtggcttcaccagcagtccaagctcctcctccttcaactttgacc
catgatacttttgcagctttggatcctgctgtcgccagtattggaaatgtctctttccct
actcaacaatcgaatgttcccaaccctggcttacctttgccagctatgatgcaaccttcg
cagttgtttgcaaatcccaatctttctccccctcaagcacctcctgttgtatatccgact
aatatggtgtacggtgccgaaccggtccctcccgttccacttttaaaccttgttcagcaa
gaaaattttgcccaagctagaattcttgacgaaaagcgtcaaaaactggaaagagaccat
atactcatggcgcaatgcgccggtttgatgactcgcagtgataagtcttttattgctcgt
atccaaatatctcaactcatgtctgaagaccccgaatctgaagatttttattatcgagtt
tattctataattcgtggccgtaatccttcagaagaggattccagtcactttattcagacc
tacttaggtcccagtagcaatcgccgtcgtggaagacgttcggaaaacccaatgcaaaga
ttgcaacagcaattacaaaagttggtttcttctgctaaggaacgtccaaaaactactcag
ttatccctagagggcgcgttaggcaagattgccataaacactgtccgtactcctcgacaa
cttcttaacgttaagcgtccttctgaacatgcaattaacgccaaagaaactacctttaaa
ggtttcgctactaaaaaagatgttcttcaagcaattgagagaatatatgattggttactt
gatttcgagcattctctccggaaattatctgtctctaatgttgaggatgaagaaactttt
aatgaatggaaaaatgatcttagccataaattagaaagcatttggaatgtccttcacatc
aatgagtcgttagacagctcttcgaaagctcgtccaccatttttatcagttatttctcat
cctaaaggaatgcgtcttctcccgcgattgttacctcatctttcgaaagaacaacaatat
gctattctcactgtcatcgttggtaacgtcgattctctcaatattgtcttgaatggaact
tttgatgcgaatggcgagttgcctgctggcattccagcagagatgacttcatttactcaa
tttgttattccttccttacttactattgtgaatgagctgggcatgtcgaacgttaatacc
ttattttctcaactccttggaagatccaatcctttatacctaatccaaactaaaattgga
ctttcgttcttaactatgctaattagccgagccgaaattcttaagcaaactgggtcgggt
actgaagaagaaaaagaaaattgggagagaatatttaatggattatttgactgtttgaaa
gaccactttgcaacagtttttcctcctccaaatgcccgcgcttacgctgatgaatcatat
ccctgggagtttttggcggcttgtgctactgctgcttcttcggaccaacatttcgttttg
gtgtctgagacgagagatagagttctcgataatattattacaagcaagagatctcctgaa
gagattgctctcgtacgtattgcgaatgttaatctattcttgaatgctatgggtcttgat
gctcgtcagctgagtgcctaa
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