Schizosaccharomyces osmophilus (fission yeast): SOMG_03284
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Entry
SOMG_03284 CDS
T09274
Symbol
uap56
Name
(RefSeq) TREX complex subunit, ATP-dependent RNA helicase Uap56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03013
Nucleocytoplasmic transport
som03015
mRNA surveillance pathway
som03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SOMG_03284 (uap56)
09122 Translation
03013 Nucleocytoplasmic transport
SOMG_03284 (uap56)
03015 mRNA surveillance pathway
SOMG_03284 (uap56)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_03284 (uap56)
03041 Spliceosome [BR:
som03041
]
SOMG_03284 (uap56)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOMG_03284 (uap56)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SOMG_03284 (uap56)
Spliceosome [BR:
som03041
]
Complex C
Other components
EJC/TREX
SOMG_03284 (uap56)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
SOMG_03284 (uap56)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
80876764
NCBI-ProteinID:
XP_056038540
UniProt:
A0AAF0AX06
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All DBs
Position
2:1722720..1724024
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AA seq
434 aa
AA seq
DB search
MASAQEDLIDYEEEEDLVQDQSAQGTTTTTEATENGEKSDKKGSYVGIHSTGFRDFLLKP
ELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEV
SVLVLCHTRELAFQIKNEYARFSKYLPDVRTSVFYGGINIKQDMEAFKDKTKAPHIVVAT
PGRLNALVREKIMRVNNVKHFVLDECDKLLDSVDMRRDIQEVFRATPPQKQVMMFSATLS
SEVRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLDEKEKNRKINDLLDSLEFNQVVI
FVKSVSRANELDRLLRECNFPSICIHGGLPQEERINRYKAFKDFDKRLCVATDVFGRGID
IERVNIVINYDMPDSPDTYLHRVGRAGRFGTKGLAITFAGSDEDSQILDKIQERFEVNIN
ELPDEIDVSSYMNA
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggcatctgctcaggaggatttgattgactacgaagaagaggaagatttggttcaggac
caatctgctcaaggaactactactacaacagaagctactgaaaatggtgaaaaatccgac
aagaaaggttcttacgttggtatccactccacaggtttccgtgactttttgttaaagcct
gaacttcttcgtgcaatcacggacagcggatttgaacacccttctgaagtgcagcaggtc
tgcattcctcaatccattttgggaactgacgttctctgtcaagctaaatctggtatgggt
aaaacagccgttttcgtcttgtctacccttcagcaaattgaacctgttgatggtgaggtt
tctgttttagtcctgtgccatactcgtgagcttgccttccaaatcaagaatgaatatgct
cgtttcagtaagtatttgcctgatgttcgtacttctgttttctatggcggtatcaacatc
aagcaagatatggaagctttcaaagacaaaaccaaggcaccacatattgttgtcgctacc
cctggacgtttaaatgcccttgttcgtgagaagattatgcgcgtgaacaatgttaagcac
tttgttcttgatgagtgtgacaagcttttagatagtgttgacatgcgtcgtgatattcaa
gaggttttccgtgccactcctcctcaaaagcaagttatgatgtttagtgctactctttct
agcgaagtccgtcctatttgcaagaagtttatgcaaaaccctctagaaatttatgttgac
gatgaaacgaagcttactcttcacggtcttcaacaacactatgttaagctcgatgagaag
gagaagaacagaaaaattaacgatttgctagactctttggaatttaaccaagtggtcatt
tttgtaaagtccgttagccgtgctaacgaattggaccgtcttctacgagaatgcaatttc
ccttctatttgcattcatggtggtcttcctcaggaggagcgtatcaaccgctacaaagct
ttcaaagacttcgacaagcgtctttgtgtagctactgatgtctttggtcgtggtatcgat
atcgaacgtgtcaacattgtaattaattatgacatgcccgattctcctgatacttatctt
catcgtgtcggtcgtgctggtcgtttcggtaccaaaggtttggctattacattcgctggc
tctgatgaagattctcaaattttggacaaaatccaggaacgctttgaagttaatattaac
gagcttcccgatgaaattgatgtcagctcttacatgaatgcttag
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