Schizosaccharomyces osmophilus (fission yeast): SOMG_03400
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Entry
SOMG_03400 CDS
T09274
Symbol
fal1
Name
(RefSeq) exon junction complex subunit, ATP-dependent RNA helicase, Fal1-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03013
Nucleocytoplasmic transport
som03015
mRNA surveillance pathway
som03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SOMG_03400 (fal1)
09122 Translation
03013 Nucleocytoplasmic transport
SOMG_03400 (fal1)
03015 mRNA surveillance pathway
SOMG_03400 (fal1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_03400 (fal1)
03041 Spliceosome [BR:
som03041
]
SOMG_03400 (fal1)
03009 Ribosome biogenesis [BR:
som03009
]
SOMG_03400 (fal1)
03012 Translation factors [BR:
som03012
]
SOMG_03400 (fal1)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOMG_03400 (fal1)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
SOMG_03400 (fal1)
mRNA cycle factors
Stress granule specific factors
SOMG_03400 (fal1)
Spliceosome [BR:
som03041
]
Complex C
Other components
EJC/TREX
SOMG_03400 (fal1)
Ribosome biogenesis [BR:
som03009
]
Eukaryotic type
90S particles
Helicases
SOMG_03400 (fal1)
Translation factors [BR:
som03012
]
Eukaryotic type
Initiation factors
eIF-4
SOMG_03400 (fal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
AAA_30
TniB
Utp25_C
Motif
Other DBs
NCBI-GeneID:
80876879
NCBI-ProteinID:
XP_056038824
LinkDB
All DBs
Position
2:join(1985536..1985591,1985681..1985817,1985864..1985884,1985973..1987069)
Genome browser
AA seq
436 aa
AA seq
DB search
MSLKTQPHNLGGRPIKRTRRNRDSELEENIHGRSSENTIILNMAEEIMDDLEFTTSEDVK
AASSFEEMNLKEDLLRGIYAYGYEVPSAVQSRAITQICKGRDVIAQAQSGTGKTATFTVG
ILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKLDY
GQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPPGTQVV
VVSATLPQDVLEMTSKFTSDPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLYDTL
TITQAVIFCNSRRKVDWLTEKMREANFTVASMHGEMPQKERDTIMQDFRQGNSRVLLCTD
IWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDIEQY
YSTVIDEMPMNVGDMV
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttaaaactcaaccccataacttaggtggacgtcccatcaagcgtacaaggagg
aaccgcgactctgaacttgaagagaacatacacggtcgttcttctgaaaataccataata
ctcaacatggcggaggaaatcatggatgaccttgaatttacgacttcagaagatgtgaaa
gcagcttcttctttcgaagagatgaatctcaaagaggatttactacgtggaatctatgct
tatgggtatgaagttcctagtgctgttcaaagccgtgcaattactcaaatttgtaaagga
cgagatgtaattgcccaagcacaatctggtactggtaagacggctacgtttaccgtcggt
attcttcagtctatcgacctctctgtacgagatacacaagctctaattctttcaccaact
cgagaattggccgtacaaattcaaaatgttgtgcttgctttaggtgaccatatgaatgtt
caatgtcatgcctgcatcggtggaacttccgtaggcaacgatataaaaaaattagattac
ggtcaacatgttgtttcaggaactcctggtcgcgtgacagatatgatccgtagaagaaat
cttcgaacacgaaatgtcaaaatgctaattctcgatgaagccgacgagctcttgaatcaa
ggttttaaagaacaaatctatgacatttatcgttaccttcctccaggtactcaggttgtc
gtagtaagtgctactttaccacaggacgttttggaaatgacaagcaaatttacttcagat
cctgttcgcattctcgtaaaaagagacgaacttactctggaaggtttaaaacaatacttc
atcgccgtcgagaaagaagaatggaaatttgacaccctttgtgatttgtatgacacatta
acaatcacacaggctgtcattttttgtaactctagaagaaaggtagattggcttactgaa
aaaatgcgcgaagcaaacttcactgttgctagtatgcatggtgaaatgccacaaaaggaa
cgggacactattatgcaagactttcgacaaggaaatagccgagtcttgttgtgcacggat
atttgggctcgaggaattgatgtacaacaagtgtctcttgtaattaattacgaccttcca
acaaatcgtgagaattacattcatagaatcggtcgtagtggtagatttggccgcaaaggt
gttgctattaattttgtcacaaacgaagatgttcgtattcttcgggatattgaacaatat
tactctacggttattgatgagatgcctatgaacgttggtgacatggtataa
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