Schizosaccharomyces osmophilus (fission yeast): SOMG_03436
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Entry
SOMG_03436 CDS
T09274
Symbol
pku80
Name
(RefSeq) Ku domain helicase (XRCC5-like protein) Pku80-like
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SOMG_03436 (pku80)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_03436 (pku80)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
SOMG_03436 (pku80)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_N
Ku_PK_bind
Motif
Other DBs
NCBI-GeneID:
80876915
NCBI-ProteinID:
XP_056038191
UniProt:
A0AAE9WDM1
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All DBs
Position
2:join(2073277..2073405,2073447..2073501,2073555..2073621,2073681..2075514)
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AA seq
694 aa
AA seq
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MSDKECTVFVIDLGADMGGCHHGRQRTDLELALSYFQDQISRKLLLNRKTDVVGIVTFKC
DETKNDLAEQEAYWNINVMYPIQTSLFTKMQYVKSRLVPNRTMQGDLISAIVVSFDIIAR
FCKKNKWKKNMVVLTGARGIFDFSDYLGIAEQMVQHEVRLSLLGIDFDDPNTQTFEYSKD
PEKKENERQLRHFVDSCKGTVLVFQDVEKRIGEPLVHRVRPVSVFKGSLTIGNDGENEAS
VTMHVERYPRTRATKPPTSSAFNAGSKLPKEDEKQEQFSSSQEKPWESNAISTVRSYVVR
DSQTNEVFEVDRKDLESGYSYGRTIVPISRSDEDILALETKAGYEVMGFIPKASLPCYYT
ISESNIIIPRGDETNKQRFSSFVQSLEREHRYALARYVPKERGSPILLVLMPYVESKKHY
LVDVQLPFAEDVRPYQFPDLEELSDPQEKQRLDEAMNHYVDNMDLDSSECPFQPKFEPEN
TYSAVPHRLFQVITHYAEFPNEKLPSPPEYVVRYTNPPANMLDNCSKDLDVISETLSVIQ
PSEPKYASQETALDSGAPISEQEIDELLNAGIDEQEEKALILHVSEKDPVGTFTEILKNP
FGLEDALSEMEGVIRRLVAKEENNLALLSLQALRVHSILEDEADRYNKYIKRLQTDVSEG
VLPRNDDALSRITSDLAPIQHEELMKARPPESSE
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaggaatgtacagtttttgtcatcgatttgggcgctgacatgggcggctgc
caccatggcagacaacgcacagacctagagttggctttgtcgtattttcaggaccaaatc
tcgcgcaagcttttgctgaacaggaaaactgatgtagttggaattgtgacattcaaatgc
gatgaaacaaaaaatgacttggcggagcaagaagcttactggaatattaatgttatgtat
ccaattcagacgtcgttgttcacaaaaatgcaatatgtgaaaagcaggctcgtacccaac
agaacaatgcagggagatttgatatctgcaattgttgtgtcgtttgatattatcgctcga
ttttgcaaaaaaaataaatggaagaaaaacatggtcgtccttactggcgcacgagggatt
tttgactttagcgattatttgggaattgctgagcaaatggtacagcatgaagtccgatta
agcttactaggaattgattttgacgatccgaatactcagactttcgagtattccaaagac
ccggagaagaaagagaatgagcgacagttgaggcattttgtcgatagctgtaaaggaacc
gtcctcgtctttcaggatgtagaaaaacgcataggagagcccttggtacatcgggttcga
cctgtaagtgtgtttaaaggatcactaaccatcggcaatgatggcgaaaacgaagcttct
gtaactatgcatgtagaacgatatccgaggacacgtgctacaaaacctcctacttcaagt
gcctttaatgctggttcaaagcttccaaaagaggatgaaaagcaagagcaattctcatct
tcgcaggaaaagccatgggaatctaatgctatatcaacggttcgctcatacgtcgtccga
gattctcaaacaaatgaggtttttgaagtggatagaaaggatttggaaagtggttacagc
tacggacgcacaattgtgcctataagtcgttccgacgaagatattttagcattggagaca
aaagcaggttacgaagttatgggatttatacccaaagcaagtcttccatgctattatacc
attagtgaatcaaatatcattattcctagaggagatgaaacgaataaacaaagattctcc
tcttttgtgcaatctttagaacgcgaacatagatatgcattggcgaggtatgttccgaaa
gaaagaggctcaccaattttacttgttcttatgccttatgttgaatcgaagaaacactat
ctagtagatgttcagttgccctttgcagaggacgtacggccatatcaatttccagacctt
gaagaactgtctgaccctcaagagaagcaacgactagatgaagctatgaaccactacgtt
gacaacatggacttagactcttccgaatgcccttttcaaccaaagtttgagccagaaaat
acgtatagcgctgtaccccatcgactgtttcaagtaataacccattacgctgagtttcca
aacgaaaaattaccatctccaccggaatatgtagttcgttatactaatcctccggcgaat
atgcttgataattgctctaaggacttggatgttatttctgaaacattgtctgttatacag
ccctcggaacccaaatatgcttcacaggaaacagcattggatagcggcgcccctatatct
gagcaagagattgatgagctattaaatgccggtattgatgaacaggaagaaaaagcattg
attttacatgttagtgaaaaggaccctgtgggaacatttacggaaattctgaaaaatcca
tttgggctggaagatgctctttctgaaatggagggcgtcatacgaaggctagttgcaaag
gaagaaaataatttagcattactgtctttacaagccttgcgtgttcattcaattttagag
gatgaagcagatcgctataataagtatattaaacgattacaaacagatgtatcagaaggc
gtcttgccaaggaacgatgatgctttgtctaggattacttcagatctcgctccaattcag
catgaggagctaatgaaggctcgtcctcctgaatcaagtgaatga
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