Schizosaccharomyces osmophilus (fission yeast): SOMG_03444
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Entry
SOMG_03444 CDS
T09274
Symbol
rae1
Name
(RefSeq) RNA export factor, nucleoporin Rae1
KO
K14298
mRNA export factor
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SOMG_03444 (rae1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_03444 (rae1)
03036 Chromosome and associated proteins [BR:
som03036
]
SOMG_03444 (rae1)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
SOMG_03444 (rae1)
Chromosome and associated proteins [BR:
som03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
SOMG_03444 (rae1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40
WDR55
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
NBCH_WD40
WD40_like
Beta-prop_NUP159_NUP214
WD40_RFWD3
Beta-prop_EIPR1
Beta-prop_WDR75_2nd
Beta-prop_Nup120_160
Beta-prop_IFT140_1st
eIF2A
Motif
Other DBs
NCBI-GeneID:
80876923
NCBI-ProteinID:
XP_056037645
UniProt:
A0AAE9WBN7
LinkDB
All DBs
Position
2:complement(join(2089605..2090511,2090815..2090891,2090938..2091009))
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AA seq
351 aa
AA seq
DB search
MSLFGQAATTTVSSATGDLKSDVEVPQPPEDSISDLAFSPHADYLAASSWDSKVRIYEVQ
STGQSVGKALYDHQGPVLSVHWSRDGTKLASGSTDKSAKVFDIQTGQNQQVAAHDDSIRC
VRFVESIGSTPILATGSWDKTLKYWDLRQPAPIATVNLPERVYTMDSVHPLLVIGTAERN
VCVVNLSEPTKIFKVAMSPLKFQTRSIACFAKADGYAIGSVEGRCAIQNLDEKIQKDNFS
FRCHRTQGTGTSDVYSVNSLAFHPQYGTFSTAGSDGTFSFWDKDSHQRLKSYPNVGGPIA
CTAFNRTGDIFAYAVSYDWSKGYSFHTPQHPNKIMLHPVPPEEMKPRPKRR
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctttttggtcaagctgctacaacaacggtttcttctgcaacaggagacttaaaa
tcagatgtcgaggttccacaacccccagaagactcgatatcagacttggcgttctcacct
catgccgattatttagctgcttcttcttgggatagtaaagtccgcatttatgaggtccaa
tcgactgggcagtctgttggaaaagccttatatgaccatcaaggccccgttttgagtgtt
cattggtcgcgtgacggaacaaaattggcttctggtagtaccgataagtcagcaaaggtt
tttgatattcaaactggtcaaaatcaacaggttgctgctcatgacgattctattcgatgt
gtccgtttcgtcgaaagcatcggcagtacccctattttggctacgggttcctgggataaa
actctcaagtattgggatcttcgtcaaccagctcctattgctaccgtcaatctacctgag
cgagtctataccatggattctgtccatcctttgcttgttataggtaccgctgagcgcaat
gtgtgcgtcgtgaatctttctgaacctacaaaaatatttaaggttgctatgagtcccttg
aagtttcaaactcgaagtatcgcatgctttgccaaagcagatggttatgctattggtagt
gtggaaggaagatgtgcaattcaaaacctggacgagaagattcagaaagataactttagt
tttagatgccaccgtacacaaggaacgggaacatccgatgtatatagcgtgaattcttta
gctttccacccccaatacggaacattttctacagctggatcagatggtacctttagcttt
tgggacaaggacagccatcaacgcttaaagagttatcctaatgttggtggtccaattgct
tgcaccgcatttaatcgtactggtgatatctttgcctacgccgtcagctatgactggagc
aagggctattcattccatacccctcaacatcctaacaaaataatgttacatcctgtccct
cccgaagaaatgaaaccacgtcctaaaaggaggtaa
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