Schizosaccharomyces osmophilus (fission yeast): SOMG_03987
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Entry
SOMG_03987 CDS
T09274
Symbol
smc5
Name
(RefSeq) Smc5-6 complex SMC P-loop ATPase subunit Smc5
KO
K22803
structural maintenance of chromosomes protein 5
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Brite
KEGG Orthology (KO) [BR:
som00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_03987 (smc5)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
SMC5-SMC6 complex
SOMG_03987 (smc5)
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Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_15
AAA_21
AAA_29
Fuc_iso_N
AAA
AAA_27
ABC_tran
Motif
Other DBs
NCBI-GeneID:
80877463
NCBI-ProteinID:
XP_056038462
UniProt:
A0AAE9WDF3
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Position
2:complement(join(3293531..3296542,3296587..3296752,3296830..3296882))
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AA seq
1076 aa
AA seq
DB search
MEGHRPEKRRRNNPDYSKYAYGSIVRVKLINFVTYEYCEFFPGPYLNMVIGPNGTGKSTV
VSAICLGLGWPPKLLGRAKEAREYIKYGKNSATIELELKLKNDKTVIITRVFSQDKSSSF
SINKEACSSSAISHLMEKFNIQLNNLCHFLPQDRVAEFAQLDPFTRLIETERAIDYDGLL
LDHEKLIDLRREEKDAMQYKDQGQNTLSSIKERQQALEKEVKIFKDREKIQSYLGMLAVA
KDLVVYREKTVIYNQLRDNKKEIKEQLKQFIEESRPILSLTDQFQSDLQDKEEAFNQLSS
SLTGFKHHAEREKLSVSKYMENEKRIYEKINSNRALLKASQSAVQEAQQALDGLLGIMGP
KPSDQNFEVIHQNMQELNSEKLRYENEKLESSHALGSIRTSKAQKLLDIDNIRRELNAYN
DLTRRKLKYIATTPGWEDAFHTYQILKENESTFVEAAYGPIYMHLECKDKKVAPLIEGFF
RADTFRTFVMSNYTDYLKLMDHITSKTRYTPTVREFSSERNKKLDDFQCMCSREKLKSFG
FDGYLLDYLEGPEVVLVALCHMLKIHQIPVAEKELSPTCVNALNNYRLPNGDPVFRTYLA
GSSIHLVFRSPYGNRELTQRTDPLPSNSVYFSESVEPSLVKEKEEQLSSQTSGLDELQAN
ESRLQNKVGECDALISEANEKIGDLRKERDEKLAPLREWQNLNDKVNHQRLVFDQRKKIP
SQYERELESSKELRKENCIALMDSITKMKDWNTKATIEFEKSLGSRLNVIETEYRLQKHE
LDAEQVNTMMRELHDKQQETSVKIAAARKDAMETYNSVVERLQNEDQERQTSITEESENF
ATVSEVENKISVEETKLGFMNVNNFVMEQYDRRKIEIEELEVKMSRLDESMLVTQEKIED
IKKSWLVKLEGVIECITERFSRSMSSMGYAGEVRLGKAEDFDKWRIDIMVQFREAEGLQK
LTGQRQSGGERSVSTIMYLLALQGVATAPFRIVDEINQGMDPRNERVVHSHIVNSTCETP
SSQYFLVTPKLLPDLTYHRNLKVLCICNGSWLPNTFRMSLTSYLENLKSELLLPAS
NT seq
3231 nt
NT seq
+upstream
nt +downstream
nt
atggagggccataggcctgaaaaacgaaggagaaacaatccggattactcaaaatatgca
tatggaagcatcgtgcgggtgaaactcatcaattttgtcacatatgaatattgtgagttt
tttcccggtccatacttaaacatggttattggtcctaatggcactggtaaaagtactgtt
gtatcagccatttgtttgggcctaggatggcctccaaagttacttggaagggctaaagaa
gctagggagtacattaagtatggaaaaaacagcgctacaattgaattggaactgaaactt
aaaaacgacaaaacggtcattataacgcgcgtattcagccaagacaagtcaagttcattc
tctataaataaggaagcttgctcatcttcagcgatttcccatttgatggaaaaattcaat
attcaattaaataatctctgccattttctgccacaagatagagttgccgaatttgcacag
ttggatccatttactagacttattgaaacagaaagagctatcgattacgacggattgttg
cttgaccatgagaaactgattgatttacgaagagaggaaaaggatgctatgcaatacaaa
gatcagggtcagaacactttaagctcaatcaaagaaaggcagcaagctcttgaaaaggaa
gtaaagatttttaaagatcgtgaaaaaattcagtcttatcttggtatgctagccgtagcg
aaagaccttgtagtataccgagagaaaacggtaatttataaccagttaagggataacaag
aaggaaattaaagagcaattgaagcaatttattgaagaatctcgtccaattctgagtttg
acagaccaatttcaatcggacttacaagataaagaagaggctttcaatcaactatcatct
tcgttgactggattcaagcatcatgcagaaagggaaaagttatccgtgtccaagtatatg
gaaaatgaaaaacgaatttacgagaaaataaattcaaatcgtgcgcttttgaaagccagc
cagtcggcagttcaagaagcccaacaggcccttgatggactgctgggaataatgggccca
aagccatcggatcaaaactttgaggttatccatcaaaacatgcaagaactcaattcggaa
aaattgcgttacgagaatgaaaaattggagagctcacacgcacttggtagcatacgtacc
tctaaagcacaaaagcttcttgacattgataatattcgacgtgaacttaatgcatataat
gatcttacacggagaaagttgaagtatatagcaacgacgcctggttgggaagatgctttt
catacttatcagatcttaaaggaaaacgaatcaacctttgttgaagctgcatatgggcct
atctacatgcatttggaatgcaaagacaagaaagttgctcctttaatcgaaggttttttc
cgagccgacacgtttcgaacattcgttatgtccaattatactgactatttgaagttgatg
gatcacattacttccaaaacgagatacacccctacagtacgagaattttctagtgaacgg
aacaagaaactggatgattttcagtgtatgtgttctcgtgaaaagcttaaatcatttgga
ttcgatggttatttattagattatttggagggaccagaagttgtcttggtagccttatgt
catatgctgaaaattcaccaaattcctgttgcagaaaaggaattatctccaacttgtgtt
aatgcgctaaacaactatcgcctaccaaatggtgaccctgtgtttagaacgtatcttgca
ggttcttcaattcacctggtttttcgttccccttatggtaatagagaattgactcaaaga
acggatccgcttccttctaatagcgtttacttctctgaaagcgttgagccatcattagta
aaagaaaaggaagagcaacttagttcccagacatctggactagatgagttgcaagctaat
gaaagtagattgcagaataaagtcggcgaatgtgacgcgttgatttctgaagcaaatgaa
aaaattggagacttacgtaaagaaagagatgaaaagttggctcctctacgagaatggcaa
aacttgaatgacaaagtaaaccatcagcgtttggttttcgaccagcggaaaaaaatccca
agtcaatatgaaagagagttggaaagtagtaaggaattgcgcaaagagaattgtatagcc
cttatggattctatcacgaaaatgaaggattggaatacaaaagcaacaattgaatttgaa
aaaagtcttgggtcaagattgaacgtaattgaaaccgagtatcgtttacaaaaacacgag
ctggatgcggaacaggtgaataccatgatgcgtgaactgcatgataaacagcaagaaact
tcagtaaaaattgctgcagcaagaaaagatgcaatggaaacgtataattctgtcgttgaa
cgcttgcaaaatgaagatcaagaacggcagacctctatcacagaagaaagcgagaatttt
gcgacagtttccgaggttgaaaataaaatcagtgtagaagaaacaaagttgggctttatg
aacgtcaataactttgtgatggaacaatatgaccgtcgaaagattgaaatagaggaacta
gaggtgaaaatgagtagactcgatgagtccatgcttgtgacacaagaaaagatagaagat
atcaaaaagtcttggctagttaagttagagggtgtcatcgagtgtataactgagaggttc
tcacgaagcatgtctagtatgggatacgcaggagaagtacgtttgggaaaagcagaagat
ttcgataaatggcgtatagatatcatggtacaatttagagaagcagaaggactgcaaaag
cttactggtcagcgacaatctggaggtgaacgatctgtttcaaccataatgtatttgcta
gctcttcagggtgtcgctactgcaccatttcgtatcgtggatgaaatcaatcagggtatg
gatcctcgaaacgaacgtgtcgttcattcccatattgtgaactcgacgtgcgaaacccca
tcatctcaatactttttggttactcctaagcttcttccagacttgacttatcatcgcaac
ctgaaagtgttgtgcatatgcaatggaagctggcttccaaatacgtttcgaatgtctctt
acttcgtatttagaaaatttgaaaagcgaactgctcttgcctgcttcttga
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