Schizosaccharomyces osmophilus (fission yeast): SOMG_04271
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Entry
SOMG_04271 CDS
T09274
Symbol
rad16
Name
(RefSeq) DNA repair endonuclease XPF
KO
K10848
DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03420
Nucleotide excision repair
som03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SOMG_04271 (rad16)
03460 Fanconi anemia pathway
SOMG_04271 (rad16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
som03032
]
SOMG_04271 (rad16)
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_04271 (rad16)
DNA replication proteins [BR:
som03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
SOMG_04271 (rad16)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
Other NER factors
SOMG_04271 (rad16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC4
Es2
Motif
Other DBs
NCBI-GeneID:
80877747
NCBI-ProteinID:
XP_056039673
UniProt:
A0AAE9WGH2
LinkDB
All DBs
Position
3:complement(join(467947..468363,468409..468669,468711..468836,468880..469207,469246..469597,469635..470398,470443..470565,470627..470895))
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AA seq
879 aa
AA seq
DB search
MEVPLHLTLSYQQKIFNEVINEDGLCVMAPGLSLLQIAANVLAYFAIPNSLVLLVGANFN
DNELLQRELEEELGKGLQIVNTETMSVDKREKAYQEGGIFSVTSRILVMDLLTQIIPTEN
ITGIVLLHADRIVSTGTEAFIIRLYREKNRTGFIKAFSDDPERFLMGVNALSNALRCMFL
RHVFIYPRFHVDVTESLEKTPADVIELNVDFTDSQKSIQSCLLSCIEATVRELRRYNSAY
LDMEEWNIDSALHKSFDVTIRRQLDPVWHRVSPKTKQLVGDLSTLKFLLIALISYDCVSF
LKILDTIILSVRTGGFSSNSQPSPWLMLDSANTLIRIARDRVYRSPAGSMDEYYPVLEEQ
PKWSVLRDVLEEISHENVLHESNDPDFSTNSILIMCSEERTCLQLRDYLSTIHYDNKESF
KMMNNRLMDYFQWREQYRNMSKSISKIEKNSKEKQSTPETSRKGTPASKRRRVRGGGTAM
SRSTPESNVTQENFSNDIRLERLLLSQISKSTYTQEENESFEVLSDNNSIYIYTYNYELD
TLLLNTLRPRFIIMFDSDPDFIRRIEVYKATYPQRATRVYFVYYGGSVEEQKYLYTVRRE
KDSFSKLIRERSNMAIILTGENERFEGQETKFLRNVNTRIAGGGHVSVTNEKPRIVVDLR
EFRSSLPSILHGNNFSVIPCQILVGDYVLSPNICVERKSIRDLIQSLSSGRLYSQCEAML
EHYEIPVLLIEYEQNQTFTSPPFSDLSTEIGKSDVQSKLVLLTLAFPKLRILWSSSAYAT
SLMFQDLKVLEKEPDPAVAASIGLEAGQDSTNTYNQAPVDLLMGLPYISMKNYKNVVYSD
LKNIQEACQTDERKWSELIGPEAGRSLYTFFRKELKDYE
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggaggtacctctccatctaacactatcctaccaacaaaaaatatttaatgaagttatt
aatgaggacggactctgtgttatggcaccaggcctttctttacttcaaattgcagcaaat
gttttagcttattttgccattccaaattctttagttctgcttgtcggagccaattttaac
gataatgagctattacagcgagaattggaagaagagttgggaaaaggtctgcaaattgta
aacacagaaactatgtctgtagacaaacgagaaaaagcataccaagagggaggtattttt
tcagtcaccagtcgaattttggtgatggatttattaactcagataatcccgacagaaaat
attacgggcatcgttttgctgcatgcagacagaattgtctcaaccggaacagaggctttc
ataatacgattgtatagagagaaaaacaggactggattcataaaagcttttagtgatgat
ccggaacgatttttgatgggagttaacgctctcagcaatgcgttgagatgcatgtttctt
cgccatgtcttcatttatcctcgtttccatgttgatgtgaccgagtctttagaaaagact
ccagcagacgttatcgagctaaatgtcgattttacagattctcagaaatcaattcaatct
tgcctactttcttgtattgaagctaccgttcgagaactacggagatataactcggcttac
ctcgacatggaagaatggaacattgattctgctttacacaagagctttgatgtaactatt
cgtcgtcaacttgatccggtttggcatcgcgtgagtcctaagactaagcaactggtaggt
gacctttcaacgttaaaatttcttttaattgcactaatctcctacgattgtgtcagcttt
cttaagattttggatactatcattctttctgtacgcacagggggattttctagtaattct
caaccatcgccgtggctcatgttggattccgcaaatacattgattcggatagctagagat
cgtgtttatcgttctccagctggatccatggatgagtattatcctgttttagaagaacag
ccaaagtggtctgttttgcgcgatgttttagaagaaataagccatgaaaacgtactccat
gaaagtaatgaccctgatttctcaacgaactcaattttgataatgtgctcggaagaacgt
acttgcttacaattacgagactacttaagtactatacattacgacaataaagagtccttc
aaaatgatgaacaatcgactgatggactattttcaatggcgtgaacaatacagaaatatg
agcaaatccataagcaaaattgaaaaaaactctaaagaaaagcaaagtacacctgaaact
agcaggaagggtacacctgcttctaaacgacgaagagtaagaggaggcggcacagctatg
tctcgatcaactccagaaagcaatgtaactcaagaaaatttttccaatgatataagattg
gaaagacttttactctcacaaatatcgaagtcaacttatacgcaggaagaaaatgaatct
tttgaggtattaagtgataataattccatttatatttatacttataactacgaattggat
acccttctccttaatactttgcgcccacgattcattataatgttcgattctgatcctgac
ttcatccggaggattgaggtgtataaagctacctatccacaaagggcaacacgagtatat
ttcgtttattatggaggatccgttgaagaacaaaaatacctgtataccgtaagaagagag
aaagattccttctccaaattaattagggagcgatcaaacatggctattatccttacagga
gaaaatgaacgttttgaaggccaagaaaccaaatttttgagaaacgtgaacacacgaatt
gctggtggaggccatgtatcagtaacaaatgaaaaaccaaggatagtggtggatcttcga
gaattccgaagctctttaccatccatattgcatggaaacaacttctctgttattccctgt
caaatactggtcggcgattatgtgctttctccaaatatttgtgttgaaaggaagtctatt
cgtgacttaatacaatcgttgagtagtggtagactttattctcagtgtgaagctatgcta
gagcactatgaaatacccgtgctgctaatcgaatatgagcaaaatcaaacgtttacttct
cctccgttttcggatctttcaactgaaattggtaaatcagatgtacaatccaagttggtg
cttttaacgcttgcgtttcctaagttgcgaatcctttggtcttctagtgcttatgctaca
tccttgatgtttcaagacttaaaggtattggaaaaagagccagatccagccgtcgcagca
tccattggtttggaagctggtcaagattccacaaacacttacaaccaagctccagttgac
ttattaatggggcttccctatatatctatgaaaaactataagaatgttgtttatagcgat
ttaaagaatatacaggaagcgtgccagacagacgagcgcaaatggtctgaacttatcgga
cctgaagcaggacgctcactgtatacattttttcgaaaggagctaaaagattatgaatag
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