Schizosaccharomyces osmophilus (fission yeast): SOMG_04272
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Entry
SOMG_04272 CDS
T09274
Symbol
prp11
Name
(RefSeq) ATP-dependent RNA helicase Prp11
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SOMG_04272 (prp11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
som03041
]
SOMG_04272 (prp11)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOMG_04272 (prp11)
Spliceosome [BR:
som03041
]
Complex A
U2 snRNP components
U2 related factors
SOMG_04272 (prp11)
Complex B
SOMG_04272 (prp11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
80877748
NCBI-ProteinID:
XP_056039725
UniProt:
A0AAF0AYD8
LinkDB
All DBs
Position
3:471277..474300
Genome browser
AA seq
1007 aa
AA seq
DB search
MSRDTRSRSPPRRPSHRDRYNYKSSKHYDRYDDRRRSNYGHQSRSEYHGSHSSRRNHRED
NWKHDRYRYDDTNERRNAIFPANRGSRSPRYNAPPISEDSSRGRNYASVPERTPEESKKE
EQPVRRSRFDQPAKTERPPPPPSTSLNNTSERIAVIEKKPHESEETKDKSGFASSNPPLD
PKIQARLEKVRAWKESKAAQSASKIDSSSVTKPTKNLMHDDKNAMPSKGISGFELGRSND
NNKEAKKMNRVRMDDEDAPRQLNLRDYEDLWDKEDREGVQANSNPNAMDEDEVDPLDAYM
ESLVGTVDTVRPGLLNTEVIDSHANEEDRITQSETLEEEENLLALAAKRSKKKDVISVDH
SKMSYEDFRKDFYVEPEELKHLTPGEVDEFRASLEGIKVRGVDCPKPVTSWSQCGLSSQT
MEVIRGLGYGNPTSIQSQAIPAISSGRDVIGVAKTGSGKTIAFLLPMFRHIRDQRPLRNG
EGPIAIIMTPTRELAVQIHRECKPFAKALNLKAVCAYGGAPIKDQIAELKRGAEIVVCTP
GRMIDVLSANQGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNVRPSRQTVLFSATF
PRAMEALARKVLKKPIEITVGGRSVVASEVEQIVEIRSEGSKFMRLLELLGELYNTKADV
RTLVFVDRQEAADTLFSDLMKRGYSSSSIHGGKDQNDRDSTISDYKAGVFDVLIATSVAA
RGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPDQDKYAVDVAKALTL
SKQHVPNELRKLADQFLDKVKAGKEKAAGGGYGGKGLSRLDETRNAERKMQRKAYGEDYE
EEEQQQVEENQAPLENLPAEKSTGDFTLDRVRAAIGGITARALSGQSAQANKLSQPISII
KSDTDEFKAKVEINDYPQQARWAVTNNANLVHVTELTGTSITTRGNFYLPGKNPEPGEEK
LYLWIEGPSELVVSQAVAELKRLLLEALEHSLEGSSRAAPTGRYKVV
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagagatactcgatcgcggtcgccgccaagacgaccatctcatagagatcggtac
aattataaaagttcgaaacattacgatcgctacgatgaccgtcgaagatccaattacggt
caccaaagtagatcggagtatcatggatcccacagttcacgtaggaatcatagagaggat
aattggaaacatgatcggtataggtacgatgatacgaatgaaagaagaaatgcaattttc
ccagctaataggggctcccgttcaccacgatacaatgctcctccgatttctgaagattcc
tctcgtggacgaaactacgcaagtgttcctgaaagaactcctgaggaaagcaaaaaagag
gagcagcctgtaagaagatctcggttcgaccagccagccaaaacagaacgcccgccgcct
cctccttcaacaagcttaaataatacatctgaacgtatagctgttattgaaaaaaaaccg
catgaatctgaagaaacaaaagataaatctggatttgcttcgtcaaatccccctcttgat
cccaaaatccaagcacgcttagaaaaagtacgtgcatggaaggaatcgaaagctgcacaa
tcagcaagtaagatagattcatctagtgtgaccaagcctactaaaaatttaatgcatgat
gataagaacgctatgccttctaaaggaatctcggggtttgaattagggcgttcaaacgac
aacaacaaagaagcgaaaaaaatgaatcgcgttcgtatggatgatgaagatgctcctaga
caattgaatttacgggattacgaagacctctgggacaaagaagatcgtgaaggcgttcag
gctaactcaaacccgaatgccatggatgaagatgaggtcgaccctttagacgcttatatg
gaatcgctcgtcggtaccgttgacactgttcgaccaggtttattgaacactgaggtcatt
gactctcatgcgaatgaagaggaccgtataactcaatcggaaactttggaagaagaagaa
aacttactcgctcttgctgctaaacgatcaaagaaaaaagatgtgatatccgtagaccat
tctaaaatgagttatgaagatttccgaaaagatttctatgttgagcctgaagaacttaaa
caccttactcccggagaagtcgacgaattccgtgcttccttggaaggcatcaaagtgcgt
ggtgtagattgtcctaagcctgtcactagttggagtcagtgtggattgtcttctcaaact
atggaagtaattcgaggtcttggttatggaaatccaacgtcaattcagtctcaggccatt
cccgctatctcatccggaagagatgttattggcgtagctaagacgggtagtggtaaaacc
attgcatttctccttccaatgttccgacacattcgggatcagaggcctttaagaaatggt
gaaggccctattgccattatcatgactccaacgcgcgaattggctgtccaaattcatcga
gagtgtaagccttttgcaaaagctttaaatttaaaagccgtctgtgcatatggaggtgca
cccattaaggaccaaattgcagaattgaagcggggagctgaaattgttgtgtgcacgcct
ggaagaatgattgatgttttgagcgccaaccagggacgagtgactaatttacatcgctgt
acttatttggttttggacgaagctgaccgcatgtttgatttgggatttgaaccacaggta
atgcggattataaataatgttcgtcctagccgacagacggttttgttttctgctactttt
ccaagagccatggaagctttagctagaaaggtgttaaagaagccaatagaaattacagtt
ggaggaagatccgtcgttgcctctgaggttgaacagatagttgaaattcgctctgaagga
tcaaagtttatgcgccttttggaacttcttggtgaactatataatacaaaggctgatgta
cgaactttggtgtttgttgatagacaagaagctgccgatactttgttctcagacctgatg
aagcgtggctatagtagcagctcaattcatggaggtaaagatcaaaatgaccgtgattct
acgattagtgattacaaagcgggtgtttttgatgttttaatagccaccagtgtagctgct
cgtggattagacgtgaaatcattacaacttgttgtgaattatgattgtcctaatcatatg
gaggattatgtacatcgggttggcaggacaggccgtgctggtcataccggtgttgctgta
acatttataactccggaccaagataaatacgctgttgatgtagcaaaagcgctgacttta
agtaagcagcatgttccaaatgagttacggaaactggcagaccaattcctggataaagtc
aaagctggtaaagaaaaggctgctggtggtggttatggaggtaaaggtctgtcccgctta
gatgaaacaagaaacgctgagcgtaaaatgcaacgaaaagcctatggtgaagattatgaa
gaagaagaacaacaacaagttgaagagaaccaagctcctttggagaatttacccgctgaa
aagtctactggtgattttacacttgacagagttcgagcagcaattggtggtatcacagct
cgagcattgagtggtcaaagtgcgcaagcgaacaagttgtcacaacccatctccatcatc
aaaagtgataccgatgaatttaaagcaaaggtagaaatcaacgactatcctcaacaagca
agatgggctgttacgaataacgctaatcttgtgcatgtaacagaattgactggtacgagt
ataacaacgaggggtaacttttatcttccaggaaagaacccagagcctggcgaggagaaa
ctatatctttggattgaagggccatctgaattggttgttagtcaagctgtcgctgagctt
aaacgcttacttttggaggcgctagaacacagccttgaaggatcaagtagggcagctcct
accgggcgttataaggttgtgtaa
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integrated database retrieval system
