Schizosaccharomyces osmophilus (fission yeast): SOMG_04319
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Entry
SOMG_04319 CDS
T09274
Symbol
ccr4
Name
(RefSeq) CCR4-Not complex 3'-5'-exoribonuclease subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_04319 (ccr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_04319 (ccr4)
Enzymes [BR:
som01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
SOMG_04319 (ccr4)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SOMG_04319 (ccr4)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SOMG_04319 (ccr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_14
LRR_8
LRR_1
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
80877795
NCBI-ProteinID:
XP_056039735
UniProt:
A0AAE9WJV5
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Position
3:complement(581192..583231)
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AA seq
679 aa
AA seq
DB search
MFNPRYTQGTIYSGTHPGLLTPDQQHAAILSVHNSPAIENGQISEHWKQQIALATQSRAF
SSPHQRAHNAAALARTSGMGTMNYSARNSGAAYGGVGANASNALSGRLNSTTVSTTTSNN
VGNNLTTASMMVTTTTTKSDDSHNEPRQDWTCLDLGGIGLRNVSTDLFKFSFLTELYINH
NKLTRLPSEIGKLRNLVILDASGNSIKAIPPELGLLTELREVLLFDNMITVIPPELGTLY
QLKILGVEGNPLQDVYKSQLMETGTTGLITALRDGCPVIPPPPEREWEKLTSDNDDANEK
SLMLTSYAEGPGVPKPNESNTNFKFTAMSYNILCERYATSTLYGYTPSWALAWSYRKDLI
MQELAGYKADIICLQEVDVENFDTFFAPEMSIKGYKGVHFPKSRVRTMNELERRVVDGCA
TFFKTSKFFMHEKSIIEFNQAPSLRRQNIKLTSNMYNRVMTKDNISVITMLESKETGHRL
IVANCHIHWDPQFRDVKLMQVAMLMDELAQVASRFCSLPSKLPADYLKDSRPTYSDFTKI
PVLICGDFNSIPGSGVLDFLSSGKVEQHHEDFMNNDYGDYTFNGRSHPFNLKSAYSETQE
LPFTNFTPGFSGTIDYIWYTNANLEATGLLKGVDRNYLSSIVGFPNAHFPSDHICLLAEF
KVKQEKGPITNPKFSNDRK
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatcctaggtatacgcaaggaacaatctattcagggacgcatccagggctgctt
acgcctgatcaacaacatgcagccattctgtcggtacacaattcgccagctatagaaaat
ggacaaatttctgaacattggaaacagcaaatcgcactcgctactcagtcaagagctttc
agttctcctcatcaacgtgcgcacaatgccgccgctttagctcggacttcgggtatgggc
acgatgaattacagcgccaggaacagtggtgctgcttatggaggagttggtgccaatgct
tcaaatgctctgtcaggaaggttaaattctaccacggtatcaactactactagcaacaac
gttggaaataatctgactacagcgagtatgatggttacgactaccacaaccaagtctgat
gactctcataacgaaccgcgacaggattggacttgcttggatctgggtggcattggatta
cgcaacgtcagcactgatttatttaagttttcctttttgacggaactttacattaatcat
aacaagctgactcgcctcccgtccgaaattggaaagttacgaaacttggttattttagat
gcttctggaaacagtatcaaagcaataccacctgaactcgggttactcactgagcttcga
gaagttttattatttgataacatgattactgtaattcctcctgaattaggtacattgtat
cagcttaaaattttgggtgttgaaggaaatcctttacaagatgtgtacaaatctcagctt
atggaaactggaacgactggcttgattactgctcttcgtgacggttgtcctgtcatccct
ccccctcctgagcgtgaatgggaaaagcttacctccgataatgatgatgctaatgaaaag
tcgctaatgcttacttcttatgccgaaggacctggcgttccaaaaccaaacgaatcaaat
actaattttaagtttactgctatgagttataatatactttgtgaacgttatgctacgtcc
actttgtatggatatactccttcgtgggctcttgcttggtcttatcgaaaggatttgatt
atgcaagaactcgctggctataaggctgatattatatgtcttcaagaagtagatgttgaa
aactttgatactttctttgctcctgagatgagcattaaagggtataaaggagtgcatttc
ccaaaaagtcgtgtacgtactatgaatgaactagagcgtcgggttgtggatggttgtgct
accttctttaaaacctcaaagttttttatgcatgaaaaatccattattgagtttaatcaa
gccccctcgcttcgaaggcaaaatatcaagcttacttcgaacatgtataatcgcgttatg
acaaaagacaacattagcgttataactatgttagaatctaaggagaccggacatcgactg
atcgtcgctaattgtcacatccattgggatcctcagtttagagacgtgaagcttatgcaa
gtagctatgctaatggatgaactcgctcaggttgctagtcggttttgttcgctgccctct
aagcttcctgctgattatttaaaggactcaagaccaacctattcagattttacaaagata
ccagtattaatttgtggtgattttaattctattcctggaagtggcgttttagactttttg
tcatcaggcaaggttgagcagcatcacgaggatttcatgaataatgattatggtgattac
acgtttaacggtagatctcatccgttcaatttgaaatccgcttatagcgaaactcaagaa
ctcccgtttacgaactttacacctggtttcagcggcacgattgattacatatggtataca
aatgctaaccttgaggcaactggtttgttgaaaggagtggatcgtaattacctttcaagc
atagtcggatttccgaatgcacacttccctagtgatcacatttgcttgctggccgagttc
aaagtgaaacaggagaagggacccataacaaatcctaaatttagcaatgacagaaagtga
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