Schizosaccharomyces osmophilus (fission yeast): SOMG_04335
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Entry
SOMG_04335 CDS
T09274
Symbol
sts5
Name
(RefSeq) cytoplasmic P body 3'-5'-exoribonuclease, Dis3L2-related
KO
K18748
protein SSD1
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Brite
KEGG Orthology (KO) [BR:
som00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_04335 (sts5)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
SOMG_04335 (sts5)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Dis3l2_C_term
Rrp44_CSD1
Glyco_hydro_47
Motif
Other DBs
NCBI-GeneID:
80877811
NCBI-ProteinID:
XP_056039574
UniProt:
A0AAF0AX02
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Position
3:619048..622305
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AA seq
1085 aa
AA seq
DB search
MGEEFQNDFSYRVNPLLQDSTNLQASPNLINNASSASMNSRLGSAQPAVSSGASSSMNRP
TWLPLQQHIHHLRHTSLLPAVESSFVHGHGHGSGSGHRRSASAGINVNTSMSNSSSFSHP
SSANFYPQVTPTSSFYPSSVFSTPPSSADSFNASPTVSSKYNLAPSNVSPVLPNVANSPR
RHSKSHSVNTVSSPAMSSLPPLSSHALPSVPVKNSPLPPLNSVPPLLRPQPRNLDGRWRP
SASQNNSPTHSTNPSFSGNIVNQPSSTLRPDGGGHRHRRSTGSLSVNSSIPSSNNYPVGG
HGNTRRNLFSPYLPQSSIPSLLAEHRLITGVLIVSKKNRSDAFVHVNGLDAEVFICGSKD
RNRALEGDVVAVELLDVEEVWAGKLEKEENRRRKDPISSRGSLDNLGTDSVLFEVPQRSV
IKARDDEQVEGQTLFLLDQKQLSTEEKPRYAGHVVAVLQRAPGQVFSGSLGILRPSSAAN
KERQGSTNASQGPTTVSGEKPKIVWFKPSDKRVPLIAIPTEQAPSDFLENDQKYSDSLFL
ASIKRWPVTSLHPFGMLVGELGPMNYIESQVAALLHDTGAHTEPWEGSAAASASSSLDAL
SNDFLNNTNRSDYRSEDVFLFTGHKRHDNPVYSDNNVDDFSNPFVSSAFHIRPTGNGYHV
GIHITDVSRVIEPGSPLDRELQRRGNTVSLCQRTVPLFPPALGDALTLKEGKDCYTISLL
LDVSSSGKIRGTWVGWAVIHPRKTYSMEKANELLETDPRLKLFNAVSSRIRVHHLGTDIP
LDRYCKLFRRWDEESTSFDPKQTNLFASSPVEVLRETLLDAANRAVAAHLRREFRDNAFL
RVQKMPSRENCRMLQSMAVQMGCVLDLSSPKSLLRSLCLIDDDTIRNILQLCYYKITPRA
VYEMPKYRPNITMNMLNMTLDDETDDLTHFTEPLDRYADLVVHYQLQLLLQGENASEKRL
RVWSQAANDISRRLVISKFAQETSVHVKIFSEWIEKHQPWQDGVVCFIAPSYFDVFFPGL
GMEKRVHLDLLNLIHVRYEEDQGVLSLYSEDGAVKVVKLLCPVRVKLFTQLSTPPLINVS
KAEFN
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagagtttcaaaatgacttttcttacagggtaaatccgttgcttcaggattcg
accaatttacaggccagccctaatttaatcaataatgctagttctgctagtatgaactct
cgtttgggctctgctcaaccggctgtctcttccggcgcttcttcttccatgaatcgtcca
acctggctccctttgcagcaacatattcatcatttacgtcatacgagccttttgccggcc
gtggagtcttcttttgttcatggtcatggccatggttctggttctggtcaccgtcgaagt
gctagtgctggtattaatgtgaacacttccatgtccaattcttcttctttttctcatccc
tcttctgcaaatttttaccctcaagtgactccaacctcttctttttatccttctagcgtc
ttttccacaccaccatcatctgctgattctttcaatgctagtcctacggtctcctccaaa
tataacttggctccatccaacgtctctcccgtattaccgaacgttgctaatagtcctcgt
cgacatagtaaaagtcacagtgtaaatactgtctcttctcctgccatgtcatctttacct
cctttatcctcacatgctttgccttccgtccccgtcaaaaactctcctctgccgcctttg
aattccgttcctcccttgttgcgccctcaacctcggaatttggatggtcggtggcgccct
tcggcatctcaaaataacagtcccacgcattctaccaacccttccttttccgggaacatt
gtaaatcagccttcttccactcttcgtcctgatggaggaggacacagacatcgacggtct
acaggaagtttgagcgtcaattcttcaataccatcctcgaataactacccggttggtggg
catggtaatactcgtagaaacctattttctccttacctacctcagtcatcaatcccgtcc
ttgctggctgaacatcgcttgataaccggcgtgctgattgttagcaagaaaaaccgatct
gatgcttttgtccatgtgaacggtttagatgcagaagttttcatttgtggctccaaggat
agaaatcgtgctctggaaggagatgttgttgccgtcgaactcctcgatgttgaagaggta
tgggccggcaaacttgaaaaagaagaaaatcggcgtcgtaaggatcctatttcctctagg
ggttctttagacaacctaggaactgattccgtcctatttgaagtccctcagcgatcagta
attaaggctcgtgatgacgagcaagtagaaggccaaacattatttctgcttgaccaaaag
cagctgagtactgaagaaaagcccaggtatgctggccatgtcgttgcagtcttgcagcgg
gctccgggacaggtgttttctggatctttgggcattttgcgacccagcagtgctgcgaac
aaagaaagacaaggttctactaatgcaagtcaaggtcccacaacagtttctggagagaaa
cccaagattgtctggttcaagccttcggataagcgtgttcctttaattgctataccaact
gaacaagcaccttcagactttttagaaaatgaccaaaagtattccgatagcctcttttta
gcttctataaagcgttggcctgtaacttccctgcatccttttggaatgctcgtaggtgag
cttggtccaatgaattatatcgaatcacaagtggctgcgctccttcatgatacaggtgct
cacactgagccttgggagggttctgccgccgcttcagcgtcttcttctttagatgcatta
tcgaatgactttttaaacaatacgaatcgaagtgattatcgctcggaagatgtctttttg
ttcactggtcataagcgtcatgacaaccccgtttactcggataacaacgttgatgatttt
tcgaatccctttgtttcttctgcttttcatattcgcccaactggcaatggctatcacgtc
ggtattcacatcacagatgtttcacgcgtaattgaaccaggatcgccgcttgaccgtgaa
ttgcagcgtcgtggtaatacagtaagtttatgtcaacgaactgttcccttatttccacct
gccttgggagatgccctcacgttaaaagaaggtaaagattgctacacaatttcgttattg
ttagacgtctcttcttccggaaagatccggggcacttgggtgggctgggcagttatccat
cctcgaaagacttactctatggaaaaggcgaatgaacttttggaaactgatcctcgcttg
aagttgtttaatgctgttagttctcgtattcgagttcatcatctcggcactgatattcct
ttggatcggtattgcaaattgttccgacgatgggacgaagaaagtaccagctttgatccc
aagcagacgaatctttttgcgtcatcaccggtagaggttttgcgtgaaactcttctagat
gccgctaatcgagctgtggctgcccacttacgaagagaattccgcgacaacgcatttttg
agagtacaaaaaatgccaagccgtgaaaattgtcgaatgttgcagagtatggctgttcaa
atgggttgtgtattagatctttcaagtccgaaatcattgctgcgatcattatgcttgatt
gatgatgatacaattcgtaacatactccaactttgctactataagatcacacctcgagca
gtgtacgaaatgcctaagtaccgccccaatataactatgaacatgctgaatatgacattg
gatgatgagacagatgatttgactcatttcactgaaccacttgatagatatgctgattta
gttgtacattatcagctgcaattactattacaaggagaaaatgcgtcagaaaagcgtcta
cgtgtttggtctcaagcagcaaatgatatcagtcgtcgacttgtgataagcaaattcgca
caagaaactagtgtgcatgtcaagatattcagtgaatggatagagaagcatcaaccttgg
caggatggtgttgtgtgcttcattgctccttcatacttcgatgtatttttccctggtctg
gggatggagaagcgtgttcatttggatctattaaacttaattcacgttcgttatgaagag
gaccagggtgtactatcgttgtatagtgaagatggagcggtgaaggttgtaaaattgcta
tgtcccgttcgggtgaagttatttactcaactttcaactcctcctttgataaatgtctct
aaagcggaattcaattag
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