Schizosaccharomyces osmophilus (fission yeast): SOMG_04537
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Entry
SOMG_04537 CDS
T09274
Symbol
ski2
Name
(RefSeq) Ski complex RNA helicase Ski2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_04537 (ski2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_04537 (ski2)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SOMG_04537 (ski2)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
SOMG_04537 (ski2)
mRNA degradation factors
3'-5' decay
Ski complex
SOMG_04537 (ski2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
Pox_Ag35
Motif
Other DBs
NCBI-GeneID:
80878010
NCBI-ProteinID:
XP_056039357
UniProt:
A0AAE9WGA2
LinkDB
All DBs
Position
3:1067474..1071112
Genome browser
AA seq
1212 aa
AA seq
DB search
MSENLINSIHACSKLKHVRENLNTTKCTSEGNFASSLDLNHESETFLRPAKSFSHEWVKK
LQKQWENEVDPNVLFNFPKSVSRTNLQFRRQGLEGHIIDYKEISEDVADLNAKNSSSFLR
KPASKSEFVRGSTNNIPFLTDDPDNPQDIAAPKPVQMALKGEDGLYQVPPGFSRGLVMNK
SVEGNNLNDEFNPDTWETKQVRPSMQKFSTLNELNEHLKSINSKHTEIDDLLPDKSTIVA
LPSSSGNVSKRKEYAHVVDSNATINNFHQLVPEMALDFPFELDNFQKEAVYHLEMGDSVF
VAAHTSAGKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKQKFEDVGILTGDVQV
NPEASCLIMTTEILRSMLYRGADLIRDVEFVVFDEVHYVNDLERGVVWEEVIIMLPPHIT
VILLSATVPNTKEFASWVGRTKKKNIYVISTSKRPVPLEHYLWVKNNVHKVVDQHGRFLM
DGYKSASDALKKPDKILPPSNNNNARGRGGAPRDRGAQVNLMRGRGNVKSVERRDANTWV
HLAGHLQKNKLLPVIIFVFSKKRCEEYVDTLSNRDLNNHQEKSEVHIVIEKAVARLKKED
RTLPQIGRMREMLSRGLAVHHGGLLPIVKEIVELLFQRGLVKILFATETFAMGVNMPARS
VVFSGVQKHDGRSFRELLPGEYTQCSGRAGRRGLDVTGTVIILSRAELPDTASLRHMILG
PSTKLISQFRLTYNMVLNLLRVETLRIEDMIKRSFSENANQSLMPQHEAEIKSNEEKLSI
LKKELNDIDIQKMKECIYHSEDFKAYTRKLHLKAISTATGRRVFRDGRLIVYQQPDNTRS
IGVLLGTATRTTTADCTLEVAYLTPQNAMKRPSDLLPFAEPFMGVIDGSLFESQFKFGLV
SLSSVERVCTTVLRIDCGGVRDRRGGAFRRLGDQLASVKGFNDPVFDEADWSKVKDFDFC
EAQEKRTFVGQKLLSYEPLLQNNFVTQYALCFQEYDLENNIRNLREFISDQNLELLPDYE
QRIRVLQELQYVDENKTVLLKGRVACEINSTSELVLTELILENTLGEFSCEETIALLSAF
VFDEKTDVEPNISSHLQAGKDMILQVAERVNRIQEKHQVLYFNEGNDFESQPRFGLMEVC
YEWARGMSFNRITDLTDILEGSIVRTIIRLDEVLRECRGAARVVGDASMYSKMEECQNLI
RRNIVFCPSLYM
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaccttataaattccattcatgcttgcagtaagctaaaacatgttagagag
aatttaaataccacaaagtgtacgagcgaaggtaatttcgcctcatcgttagatctgaat
catgagtcagaaacttttcttagacctgcaaaatcgttctcccatgagtgggttaaaaaa
ttacaaaagcaatgggaaaatgaggtagatcccaacgttctttttaattttcccaaaagt
gtatctcgtacaaacttgcaatttcgcagacaaggactggaaggtcatatcatagactac
aaagaaatctctgaagacgttgctgatttaaatgcaaaaaattcttctagctttttgaga
aaaccagcctctaaaagcgaatttgtacgaggtagtaccaataatataccattcttgact
gatgatcctgacaatccccaggacatcgctgcccctaagccagtgcaaatggccttaaaa
ggagaagatggtttgtatcaagtccctcccggattttctagaggtttggttatgaataaa
tccgttgaagggaataacttgaatgatgaattcaatcctgatacttgggagacaaaacaa
gtgcgcccttctatgcagaaatttagtactcttaatgaactaaatgaacacctgaaaagc
attaactcaaaacataccgaaatcgacgatttacttcccgacaagagcaccatcgttgcc
cttccttcttcaagcggcaacgtctccaaacgaaaagaatatgctcatgttgttgacagc
aatgcaaccatcaataactttcaccaactggtacctgagatggcgctcgactttcctttt
gaactagacaactttcagaaagaggctgtatatcatctggaaatgggcgactccgttttt
gtggctgctcatacgagtgcaggaaagaccgttgtagctgaatatgcaattgcgctcgcc
caaaagcacatgaccaaagccatttacacctcacccattaaagcactctcaaatcagaag
tttagagactttaagcaaaaatttgaagatgtaggtatccttacaggagatgtgcaagtc
aatccagaagcatcgtgcctaatcatgactacggaaattttacgaagcatgttgtatcgt
ggtgccgatttgatccgtgatgtcgagtttgttgtttttgatgaagttcactatgttaat
gatttggaaagaggggttgtttgggaagaagttattattatgcttcctcctcatattact
gtaatccttctttctgctacggtcccaaatacaaaggaatttgcttcatgggtcggccgt
actaagaagaaaaatatttatgtgatatctacttccaagcgaccagttcctcttgagcat
tacttatgggtcaagaataacgtccataaggtagtggaccaacatggccggttcctaatg
gatggatacaaatctgcgagtgatgcccttaaaaagccggataagattttacctccttca
aataacaacaatgctagaggtcgtggcggagcacctcgtgaccgaggtgctcaagttaac
ttgatgcgtggaagaggcaatgtcaagtcagttgaacgacgagatgcaaatacttgggta
cacttagctggccacctccagaaaaacaagttattaccagttattatcttcgttttttca
aaaaaacgctgcgaagaatacgttgacactttatcgaatagggatttgaataatcaccag
gaaaaaagtgaagttcacattgtcattgaaaaggctgtagcccggttgaagaaggaagac
agaacacttccgcagattggtcgtatgcgtgagatgctttctaggggtcttgcggtacac
catggcggtttattacccattgtcaaagaaatagttgaacttttgtttcaacggggactt
gtaaaaatactatttgcaacggaaacatttgcgatgggtgttaatatgcctgctcgatct
gttgtgttctccggcgtccagaaacatgatgggcgcagtttccgcgagcttttaccgggc
gaatatactcaatgttcaggtcgagctggaagacgtggtttggatgttaccggaactgtg
attattttatctcgagctgaattgccagacacagccagtctacgacacatgatccttggt
ccttcgacaaaactaatcagtcagttcagattaacatataatatggtcctaaatctgctt
cgtgttgaaacattgaggatcgaggacatgatcaaacgaagttttagtgaaaacgcaaat
cagtcactgatgccgcaacatgaggccgaaatcaaatcaaatgaagagaagctttcaata
cttaagaaagagctcaacgatatagacatacaaaagatgaaggagtgcatttatcacagt
gaagatttcaaagcatacactaggaaattgcatttgaaagctatttctacagctacaggt
agacgcgtctttcgtgatgggagattaattgtctatcagcaacccgataatactcgtagc
atcggcgtgctattaggaacagcgacgcgtactaccactgcagattgtaccttagaagtt
gcttatttgacacctcaaaatgctatgaaacgcccttcagatttactgccttttgcagaa
ccattcatgggtgtaatagacggttcattattcgagagtcaatttaagtttggacttgtt
agtctttcaagtgttgagcgtgtatgtacaaccgttctacgtatcgattgcggaggtgta
cgtgaccgtcgaggtggagcttttagaagattgggcgatcaactagcttcagttaaggga
tttaatgatcctgttttcgatgaagcagattggagcaaagtgaaagatttcgatttctgc
gaagctcaggagaagcgaacatttgttggacagaaacttttgtcttatgagccgttgctt
caaaataacttcgtcacacaatacgcactatgcttccaagaatacgatttggaaaataat
atcagaaatctgcgggagtttatttctgaccaaaaccttgaacttcttcctgattacgaa
cagagaattcgggtacttcaggagcttcaatatgttgatgaaaataaaacggttttgttg
aagggccgggttgcttgtgagattaactccactagtgaactggtgttaacagaattaatt
ctggaaaatactttgggtgagttttcttgtgaggagactatagctttgctttctgcgttt
gtttttgatgaaaagacggatgttgagccaaatatttcttctcacttacaagctggtaaa
gatatgattctccaggttgctgagcgagtcaatcgcatccaggaaaagcatcaagtgtta
tattttaatgagggaaatgattttgaatcgcaaccgcgatttggtttgatggaagtgtgt
tatgaatgggcaagaggtatgtcatttaatcgaatcaccgatttgacagatattttggaa
ggctccattgttcgaacaatcattcgcctggatgaagttctccgagaatgccgaggtgca
gcccgtgttgtaggcgatgcttcgatgtattctaaaatggaagaatgtcaaaatctcatc
cggcgtaatattgtcttttgcccctccttgtatatgtaa
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integrated database retrieval system
