Schizosaccharomyces osmophilus (fission yeast): SOMG_04561
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Entry
SOMG_04561 CDS
T09274
Symbol
rad50
Name
(RefSeq) DNA repair protein Rad50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03440
Homologous recombination
som03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SOMG_04561 (rad50)
03450 Non-homologous end-joining
SOMG_04561 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
som03032
]
SOMG_04561 (rad50)
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_04561 (rad50)
DNA replication proteins [BR:
som03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
SOMG_04561 (rad50)
DNA repair and recombination proteins [BR:
som03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
SOMG_04561 (rad50)
BRCA1-C complex
SOMG_04561 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
SOMG_04561 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
SMC_N
SbcC_Walker_B
Rad50_zn_hook
AAA_29
AAA_13
AAA_22
AAA_16
ABC_tran
DUF2239
Motif
Other DBs
NCBI-GeneID:
80878033
NCBI-ProteinID:
XP_056038999
UniProt:
A0AAE9WE63
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All DBs
Position
3:complement(join(1184658..1184678,1184727..1188356,1188399..1188482,1188520..1188642))
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AA seq
1285 aa
AA seq
DB search
MSCIDKMSIMGIRSFDSRSRESIQFFSPLTLIVGQNGSGKTTIIECLKYATTGILPPNTK
GGAFIHDPKLCGEKEVLAQVKLAFKNTNQIRMICTRSLQLLVKKTTRQQKTLDGQLLIVN
DGERSTISNRCAELDLQIPLSLGVSRALLDYVIFCHQEESFWPLSEPSNLKKRFDEIFES
MKYAKALEQLKNVRRDQENQIKVDQANLVHFRSDKERAEKIRLQLHGSQKRISFINHRIE
ELDHKISHTAKLQDELFRSTEEFEQKEVAISQFENHCTFLASSIEDLKLHMVEMNNTTDE
LEKISRNFNGQVETEQNLLLELENNKSSTEVQITENRKKMETLSANLGRAEGELVSLERT
KRRKRETLENIASSHGFSEQDENEVITKYVEHFDSSMSENKRIVQQIRDKRKERGARIEG
LKAHEMYLQKTIAGLEDSIKNNQSNIIYIQSRIQDLKHMAQTRDALSEELKRGEKEFQDA
RTVYEGNEWNKKIDEEKMGILDSEKELENFASLIDKFHDNANIHSKLQLLIETREKLLAD
VKEAGECFKQRFFELTSLDLHTVSEYDEKLNASLQKSQVTIDESKKKLNAANATVVELEY
KFSTYRKELSDLEFRNNEKAQLSRYRSINLDEHNENIQSLDSRIEDSKRTAHSLQFGISF
YEKAIQMSDSHHACQLCQRLFENDEEAAFVEHCRAMIENIPGKLSDVTDQLEILNKERKE
LSDVIPLIEEAKFIKNSMKEKSDILTITEQQLGNAKEQAATLDFQLKDISKKHEAFESLN
FKLKDINRLNEETEKCNSHVSDLQAQLSPSYKELDINQISLERKKVAEMNKASKKKLETI
IYEEAKQRKELDNVNIANKEREVKFSDLKLKINELHQLEVEIKNCDEKKIKMRRDLEDTK
QSCDEQRPLFNRLNDEMLSLENDLEKFEEKSRSLLQDKNGFLQQLQDWNRELQIDIKSEL
DRLVKEKDGLFRTVEYDLSELNASTQKIKNIQEKLADLRSRERNISDNLRLRRLHSQFLE
ALEKKNSLISQQAKTNREAFRDEMESLKMQYGALNAERAGLLGECRQLDSGVNQLTQDLN
LEFKDSDERYRRQLIKTRTTDKANDDIGKYAKALDIAIMQLHSLKMNEINRIVDELWKQT
YCGTDIDTILIRSDAEGKGNRSYNYRVCMVKGDAELDMRGRCSAGQKVLACIIIRLALAE
CLGVNCGILALDEPTTNLDEENIMSLAKSLSKIVDFRRRQANFQLIIITHDEQFIRLVNT
DAYCGYYYKVKRDANQKSIIVRETM
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgcattgacaagatgtccattatgggcattcgatctttcgatagtcgatcaaga
gaaagtatccagtttttttctcctttgacattaatcgttggtcaaaatggttcaggaaaa
acaaccattatagaatgtttaaaatatgctacgacaggaatacttcctccaaacaccaaa
ggtggtgcattcattcatgatccaaagttgtgtggtgagaaagaggttttggcgcaagtg
aaactagcgtttaaaaacacaaatcaaataaggatgatatgtacacgatcattacaattg
ctagttaaaaagaccacaagacagcagaagacccttgacgggcagttgttgattgtcaat
gatggtgagcgtagtactatcagcaatcgatgtgcagagttagatttacaaatccctcta
agtctcggtgtcagtagagcactgcttgattatgttatattttgtcaccaagaagaaagt
ttttggcctttaagtgaaccctcgaatttaaaaaagcgatttgacgagatttttgaatct
atgaaatacgcaaaagccctcgagcaactaaagaacgtaaggcgtgaccaggaaaatcaa
atcaaagttgatcaagccaacttagtacattttcggtcagacaaagaacgagctgaaaaa
ataaggttgcaacttcacggttcccagaaacgcatctcatttatcaaccacagaattgaa
gaactggatcataagatatctcatacagcaaaacttcaggatgagcttttcagatccact
gaagaattcgaacaaaaagaggttgccatatctcagtttgaaaaccactgcacttttctg
gcttcgagtatagaagacctaaagcttcatatggttgaaatgaacaacactacggatgaa
ttggagaaaatatctagaaatttcaatgggcaagtagaaactgaacaaaaccttctgtta
gaacttgaaaataacaagtcttcaaccgaggttcaaataactgaaaacaggaaaaagatg
gaaacgctctcggctaatttaggacgtgctgaaggagagttagtatctctggaacgaacg
aaacgtagaaaacgggaaactttggagaatattgctagctcacatgggttttcggagcag
gatgaaaacgaagttataacaaaatatgttgaacattttgattcaagtatgtctgaaaac
aaaagaattgtacaacaaattcgagataaaagaaaagagagaggtgctcgaattgagggg
ctaaaagctcatgagatgtatctgcaaaaaaccattgcaggtttggaagattccataaag
aataatcaaagtaatataatatatattcaatcgcgtatccaagatctcaagcatatggct
caaacgagggatgctttatcagaagagctaaaacgaggagaaaaagaatttcaggatgct
cgaacagtgtacgaaggcaatgaatggaataaaaaaattgacgaagagaaaatggggata
ctcgatagcgagaaagaactcgaaaactttgcttcattgattgataaatttcatgataat
gccaacatccactcaaaactacaattgctaatagagacaagggaaaagttattggctgac
gtaaaagaagctggagaatgtttcaagcagcgattctttgaattaacctcccttgacctt
catactgtcagtgaatatgatgaaaaattaaatgcctctttacaaaagtcccaggtgact
atagatgaatcaaagaaaaaactgaacgccgcaaacgccactgttgttgaacttgaatat
aagtttagtacttatcgcaaagaactatcggatttggagtttcgaaataatgaaaaggct
cagttaagtcggtatcgctcaattaacttggatgagcacaatgaaaatattcagagtttg
gactcaaggattgaagatagtaaacgaacagctcactccttacaatttggtataagtttc
tacgaaaaggcaattcagatgtctgattcacaccatgcctgtcaactatgtcaaagattg
tttgaaaacgatgaagaagctgcttttgttgaacattgccgtgcgatgatagaaaatatt
cctgggaaattgtcagatgtaaccgaccaactggagatattgaataaagagagaaaagag
ctaagtgatgtaattccccttattgaggaagcaaaatttataaagaattcgatgaaggaa
aaatctgatattctgactataacagaacagcagttaggaaatgcaaaagagcaagctgcc
accctggattttcagttgaaagatatcagcaaaaaacacgaggcttttgaaagcttaaac
ttcaagttaaaagatattaatcgtctgaatgaggaaactgagaagtgtaattcgcacgtt
tcagaccttcaggctcaacttagtccatcgtataaggaattggatataaaccaaattagt
ctggaacgaaagaaggttgcagagatgaacaaagcttcaaaaaaaaaattggagacaata
atttatgaagaggccaagcaaagaaaggagcttgacaatgtgaatatcgctaacaaggaa
agggaggttaaattctcagatttaaaactcaaaataaatgagttacatcaactagaagtt
gagataaaaaattgcgatgagaagaaaataaaaatgcgaagagatctcgaagatactaaa
cagtcttgcgatgaacaacggccattgtttaatagacttaatgacgaaatgcttagtttg
gagaatgatcttgaaaaatttgaggaaaagagccgatcactattgcaagataagaacggg
tttcttcaacaattacaagattggaatagagagttgcaaatcgatataaaatctgaatta
gatcgtctagtaaaagagaaggatggcctttttcgaactgttgaatacgatttatctgaa
ctgaatgctagcactcaaaagattaagaacattcaggaaaaattggctgacttgcgttct
agagaacgcaacatttcggacaacttacgtcttcgccgattacacagtcagtttctggag
gccttggaaaagaaaaatagcctgatatctcaacaagcgaagacaaatagagaggctttc
cgtgatgaaatggagtctttgaaaatgcaatatggagcactaaatgctgagcgcgccggg
ttattaggtgaatgtcggcaacttgattctggtgtaaatcaattaactcaagatttaaac
ctcgaatttaaagattcagatgaacgttatcgccgccaattaataaagaccaggacgact
gataaagctaatgatgatataggcaaatatgcaaaagctttagatattgccattatgcaa
ctccattcattaaaaatgaatgaaatcaatagaattgtagatgaattatggaaacagact
tactgtggtacagacattgatacaattctaattcgctcagacgccgaaggaaagggaaac
cgctcttataattatagggtttgcatggtaaagggagacgccgaattggatatgagagga
cgatgcagtgctggtcagaaggttctggcctgtattataattcgccttgccttggcagaa
tgtctaggagttaactgtggaattctagcccttgatgagcctacaacgaatttggatgaa
gaaaatattatgagcttagcaaaaagtttatctaaaatcgtggactttagaaggcgacaa
gcaaactttcagctaattattattactcacgatgagcagtttatccgtttagttaataca
gacgcatactgtggttattattataaagttaaaagagacgcgaatcagaaaagcattatt
gtacgagaaacgatgtaa
DBGET
integrated database retrieval system
