Schizosaccharomyces osmophilus (fission yeast): SOMG_04581
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Entry
SOMG_04581 CDS
T09274
Symbol
srs2
Name
(RefSeq) ATP-dependent DNA helicase, UvrD subfamily
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03420
Nucleotide excision repair
som03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SOMG_04581 (srs2)
03430 Mismatch repair
SOMG_04581 (srs2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
som03400
]
SOMG_04581 (srs2)
Enzymes [BR:
som01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SOMG_04581 (srs2)
DNA repair and recombination proteins [BR:
som03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SOMG_04581 (srs2)
MMR (mismatch excision repair)
Other MMR factors
SOMG_04581 (srs2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_12
AAA_30
AAA_11
DUF1435
Motif
Other DBs
NCBI-GeneID:
80878052
NCBI-ProteinID:
XP_056038987
UniProt:
A0AAE9WED8
LinkDB
All DBs
Position
3:join(1222597..1222958,1223009..1223273,1223316..1225406)
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AA seq
905 aa
AA seq
DB search
MASTPSYLQSLNTQQRLSVESDHKYTQILAGPGSGKTRVLTSRVAYLLQVANCNPRDLIV
ATFTNKAANEIKQRIHTLLGNEKSSKIVSGTFHSIAYKYLSVYGKHIGLSSKWLVADRSD
AKSIVKRLLTTLKKADNTLASGIRGQELTPENVLTRISKMKSSGLLAKSDSPELVLLPGM
DTPPPELQSYQSTELYKLYQTTLRKTNLMDFDDLLLHFILLLQTYPSCIANIKHILIDEF
QDTSRIQYYLLKLLSQNDTAITIVGDPDQSIYGFRSAEIENLNRMKKDFQGTQILNLEMN
YRSAHCILELALSIISQDKTRPQKDIRSDYSMSLRPSYRTFETNQKESYWIACEIKRIVE
CCPQLFTYDDVAILVRSSSLTRSLEHALTEVGVSYRMVGVHKFFDREEVRDMVAYARVIA
NRDPTSLIRILNTPARNIGKTKIDRLLEETERRNLPLWQTLVQVSENYILLSQRQDKSFL
KSLKTFIGLIEDLDRESHDKDKSVSDLLSSVLREIKYYDFLRKKNPETYDEKWDNVMELV
HQSDVLAQQEEVSLIEEGPQEIPLHKFLAHVTLASNDKEEDKSSKVTISTLHAAKGLEWP
VVFLPCVCENIIPHSRSDDVDEERRLLYVGITRAQALLYISSFQGSVGSYSDAESFSSKQ
DISSFLRSYETTKYLSEQDIVFNNQLASEISIILNRKEYGTVKNISIQDINERSNKAHQN
EIIYTDKPAFVCSRSLAETELKKRVRDQEFMGVPDEPSEKENASKRKGNVDIREFFSKKE
DPRLGLNIGKTDFSYQQQKQTLVNNGSNNRLHGISVKDIGKRKIPRRTISTEKPAKYEEA
SSFSSPSTNKQSTHSLINEEKEQLKDIKTSERESANENTSKNPLQISQAPRKKRLGVRLR
VSRML
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atggcatccacaccgtcttatttacagtctttaaatactcagcagcgactgagcgttgag
tctgaccataagtatacgcaaattttggcaggtcccggttcaggaaaaacgcgtgttttg
acttcccgagttgcttacctgttacaagttgcaaactgtaatcctcgagatctaatagtt
gcgactttcaccaataaagcagcaaacgaaattaagcaaaggatccacactctccttgga
aacgagaagtcttccaaaatagtatctggaacatttcattctattgcctataagtacttg
tctgtatatggaaagcacattggactaagttcaaagtggttagtggctgacagaagcgat
gcaaaatccatagttaagcggttgttgacgactttaaaaaaggcagataatacattagct
agtggaattcgtggacaagaattaacacccgagaatgtcttaaccaggatatcgaaaatg
aaatcatccggattacttgcaaagtctgatagtcctgaactcgttttactaccaggaatg
gatactccaccgcccgaactacaaagttatcaatccaccgagctttacaagctatatcaa
acaacactgagaaaaaccaatttaatggactttgacgatcttctattacattttatcctt
ttgcttcaaacgtatccatcgtgtatagcgaatattaaacatattctaattgacgaattt
caagacaccagcaggattcaatattatttattaaagctcttatcccaaaacgatacagcc
attactattgtcggcgatcccgatcaatcgatttacggtttccgaagtgctgaaatagaa
aacttaaatagaatgaaaaaggatttccaagggacacagatactaaacttagaaatgaac
taccggtctgcgcattgcattttggaattagctctctcgattatatcccaagacaaaaca
aggccgcagaaagatatcaggagtgattattcaatgtccttaaggccatcttaccgcacc
tttgaaaccaatcagaaagaatcttattggattgcttgtgaaataaaacgtatcgtggaa
tgttgtccccaattatttacatatgatgatgtagccattctagtaaggtcgtcgagtttg
actagaagtttagaacatgccttgacggaagttggtgtgtcgtatagaatggtgggagtt
cataagttctttgacagagaagaagtacgcgatatggtagcttatgcgagagtgattgcc
aatcgagatccaacatcgttaattcgaatccttaatactcccgctagaaatatcggaaag
acaaagattgatcgtcttctcgaagagactgaacggcgaaaccttccactctggcaaacc
ctagttcaggtaagcgaaaactatattctcctatctcaaagacaagacaaatcattttta
aagtctttaaagacttttattggattgatagaagacctcgacagagaatcgcatgataaa
gataagtcggttagcgacttattatcttctgttttgcgtgaaatcaaatattatgacttt
ctacgcaaaaagaatccagagacatatgacgaaaaatgggataatgtgatggaattggtt
catcaaagcgacgttcttgctcaacaagaagaagtgagtttaatagaggaaggaccccaa
gagattcctcttcataagttccttgcacatgtcactttagcaagcaacgataaagaagaa
gacaaatcttcaaaggttaccatttctaccttacatgctgcaaaaggcttggaatggcca
gtcgtttttctcccttgtgtttgtgaaaatataattcctcactcacgttcagacgacgtt
gatgaagaaagaaggttactctatgtgggtataacacgtgcacaagctttattatatata
tcgtcatttcaaggttcagtcggatcctacagtgatgctgagagttttagctccaagcag
gatattagcagttttctgagaagctatgagacaacaaagtatttatcagaacaagatatt
gtattcaataatcagctagcttctgaaatcagtattatattgaatcggaaggagtacggc
accgttaaaaacattagcatacaagatataaatgagcgatcaaataaggcacatcagaac
gaaataatatatacagataagccagctttcgtgtgttctcgttcattagcggaaacggaa
ttaaagaaaagagttagggatcaagaattcatgggagttcctgacgagccatctgaaaaa
gaaaatgcgtcaaaaagaaaaggaaacgttgatataagagagttcttttcaaagaaggaa
gaccctcggttgggattaaacataggcaaaaccgacttttcctatcaacaacaaaagcag
acgttagtgaacaacggttcaaacaatagacttcatggaatttcggtaaaagatataggg
aaaagaaagataccaagaagaactatctcaactgagaaacctgcaaaatatgaagaagcc
agctctttttctagtccaagcacaaataagcaatccacgcattctctcatcaatgaggaa
aaggaacagttgaaggatataaaaacgagtgaaagggagtcagcgaacgagaatacttct
aaaaacccattacaaatatctcaagctccgagaaagaagcgattaggagtaaggcttcgt
gtttcccggatgctgtaa
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