Schizosaccharomyces osmophilus (fission yeast): SOMG_04590
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Entry
SOMG_04590 CDS
T09274
Symbol
pta1
Name
(RefSeq) mRNA cleavage and polyadenylation specificity factor complex subunit Pta1
KO
K06100
symplekin
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
SOMG_04590 (pta1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
som03021
]
SOMG_04590 (pta1)
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_04590 (pta1)
Transcription machinery [BR:
som03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
SOMG_04590 (pta1)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
SOMG_04590 (pta1)
U7-dependent histone pre-mRNA processing factors
SOMG_04590 (pta1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Gp_dh_C
Motif
Other DBs
NCBI-GeneID:
80878061
NCBI-ProteinID:
XP_056039661
UniProt:
A0AAE9WGT0
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Position
3:complement(join(1239321..1239460,1239502..1239575,1239623..1241604))
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AA seq
731 aa
AA seq
DB search
MEQPEADEHIARLNQARDIVKEDESLFPDIVKNILSVANYSDLRFKKWMSSFLWFGFSSK
RVDFDQKVELAVACLETISTLLSFDNDEVKKDIILCSCTLYPLVFFHCCTCPDDTQSWEA
ISKIKQEILSLFDSSTNHLKISCIKFISTVILAQSSGIRDPRLVTKSDVSLSKVPTNHPF
LNPTTLKQESFDLFQKLFTVFSSKTLSPLFITSVLNVLPVIANRRKELGPTIIENLLQFH
LPNPKEASDESATLDKLARRCIEKNLKVTLLHLTKNAGISSSLIEKIHAYLSGQIYQNKT
EDHAKKRQASAPDFISSKRAKSSAVQSLMDRIQPRELEEDSAALNNPLVNIFASQAATNP
LASFDVTAIPVEVVTEIVLACLRQLDNDYFHQQINMLRERVRSLSEPETLGLDQEVDEEE
DDDYEPPEVDVQTINASVEREAARFEGVTPSVVNTDTYELPTSETLSPMAVLEYFHSSLS
RLFDYSSQFERTIVSSSNLQNLTLENVDNTVWDKHHWSILLPRLCTRGLNNYQPANPDEQ
QGESSFTLSSFVRGQLFTYIASNWRACTNLTLNWLSEEWYNDRLMKENEKNEESSVKWEG
PQYERWALRIIDSVLPYLEMKDKVFMIFLSELPELTDAMIEKVKFICLDPDKSKLGFMTL
QYLIKFRLPARNQCLDLLQKMWWENEDVRKSAQTLLERWRPGFVKSASEELSQSNSQPAD
GESKPSEEVGA
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggaacagccagaagccgatgagcatatagcgcgtcttaatcaagctcgcgacattgtc
aaagaggatgaaagccttttccccgatattgtaaaaaacattctttctgttgcaaattat
tcggacttgaggtttaaaaaatggatgtcgagttttctatggtttgggttttctagtaaa
agggtcgactttgatcaaaaggttgaattggctgttgcttgcttggaaacaataagtact
cttctttctttcgataatgatgaagtgaaaaaggacataatcttgtgctcttgcactctg
tacccacttgttttctttcactgctgtacatgtccagacgatactcagtcatgggaagca
atttcaaaaataaagcaggaaattttatctttgttcgattcttctaccaatcatctgaaa
atttcatgcattaaattcatctctactgtcattctagcccagtcatccggtattagagat
cctcgtttagttacaaagtcggatgtatccctttctaaggtccctacaaatcatcctttt
ttgaaccctactactttgaaacaagaatcttttgaccttttccaaaaactgtttactgtg
ttttcatccaagaccctaagccctctttttattacgagtgtgctcaatgtgcttccagta
attgcaaacaggaggaaggagcttggtcccactatcattgaaaatttgttgcagtttcac
ttgcctaatcccaaggaagctagtgacgagtccgctacattggacaagcttgctcgtcgt
tgtattgagaaaaacctgaaagttacgttgcttcatttgacgaaaaatgctggaatttct
tcttctcttattgaaaaaatacacgcttatctttcagggcaaatttatcagaacaaaaca
gaggaccatgcaaagaagcgacaagcttcagcaccagacttcatttcttcaaaacgtgcc
aagtcttctgcggtgcaaagtttaatggacaggatacagcctcgtgagcttgaagaagat
agtgccgctttgaataatcctttagtcaatatctttgcgtcgcaagcagctaccaaccct
ttggctagtttcgatgtgacagcaattccggtggaagttgtaactgagattgtgctggct
tgtcttcgtcagttagataatgattactttcatcaacaaattaatatgcttcgtgaacga
gttcgttctttatctgagcctgaaacactgggattggatcaagaagttgacgaagaagaa
gatgatgattatgaacctcctgaagttgacgttcagacgattaatgcaagcgtcgaaaga
gaagcagctagatttgagggcgttactccttcggttgtcaatacggatacttatgaacta
ccgacgtcggaaactctttcacctatggcagtattggaatacttccacagttccctgtca
cgtctctttgactattcatcacagtttgaaagaactattgtatcttcatcaaatctacaa
aatctcacattagagaatgttgacaatactgtttgggataaacatcattggtctattctt
ctaccaagattgtgcactcgaggattgaataattatcaacccgccaacccagatgaacag
caaggagagagttcatttactttgtcgtccttcgtacgaggacaattatttacgtacata
gcttcaaactggagagcatgtaccaacttaacgttgaattggctttcggaagaatggtat
aatgatcgtcttatgaaggagaacgaaaagaatgaagaaagttctgtcaaatgggaaggg
ccgcaatatgaaagatgggctttgcgcataattgacagcgtacttccttatcttgaaatg
aaagacaaagtgtttatgattttcctgtcagaattgcctgagcttacggacgcgatgatt
gaaaaggtaaaatttatatgtctcgaccctgacaaatcgaaactgggatttatgacttta
caatatctaattaagtttcggttaccagcgagaaaccaatgcttagatttgttacaaaaa
atgtggtgggaaaatgaggatgttcgcaaatctgcgcaaacattattagaacgatggcga
cctggttttgtcaaatcagcatccgaagagttgtctcagtcaaattcgcaacctgcagac
ggggaatcgaaaccctctgaggaagttggtgcttaa
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