Schizosaccharomyces osmophilus (fission yeast): SOMG_04620
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Entry
SOMG_04620 CDS
T09274
Symbol
lsm6
Name
(RefSeq) Lsm2-8 complex subunit Lsm6
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
som
Schizosaccharomyces osmophilus (fission yeast)
Pathway
som03018
RNA degradation
som03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
som00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
SOMG_04620 (lsm6)
09123 Folding, sorting and degradation
03018 RNA degradation
SOMG_04620 (lsm6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
som03019
]
SOMG_04620 (lsm6)
03041 Spliceosome [BR:
som03041
]
SOMG_04620 (lsm6)
Messenger RNA biogenesis [BR:
som03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SOMG_04620 (lsm6)
mRNA degradation factors
5'-3' decay
Lsm complex
SOMG_04620 (lsm6)
Spliceosome [BR:
som03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
SOMG_04620 (lsm6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
80878089
NCBI-ProteinID:
XP_056039372
UniProt:
A0AAE9WGB7
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All DBs
Position
3:complement(join(1303495..1303526,1303600..1303713,1303856..1303940))
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AA seq
76 aa
AA seq
DB search
MDSSPNDFLNKVIGKPVIIRLSSGVDYRGILSCLDGYMNLALEQTEEFVNGKKTNEYGDA
FIRGNNVLYVSALNKQ
NT seq
231 nt
NT seq
+upstream
nt +downstream
nt
atggactcttcaccaaatgattttttaaacaaggttattggaaaacctgtcatcatccgt
ttaagctctggtgtggattatcgtggaatcttgagttgccttgacgggtatatgaatctt
gccttggaacagacagaagaatttgttaatggtaaaaaaacaaacgaatatggtgacgct
tttattcgtggtaacaatgttttgtatgtatcagcattaaataagcaataa
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